Free Energy Calculations of the Interactions of c-Jun-based Synthetic Peptides with the c-Fos Protein
The c-Fos–c-Jun complex forms the activator protein 1 transcription factor, a therapeutic target in the treatment of cancer. Various synthetic peptides have been designed to try to selectively disrupt the interaction between c-Fos and c-Jun at its leucine zipper domain. To evaluate the binding affin...
| Main Authors: | Zuo, Zhili, Gandhi, Neha, Arndt, K., Mancera, Ricardo |
|---|---|
| Format: | Journal Article |
| Published: |
John Wiley and Sons, Inc.
2012
|
| Online Access: | http://hdl.handle.net/20.500.11937/43767 |
Similar Items
Calculations of the free energy of interaction of the cFos-cJun coiled coil: effects of the solvation model and the inclusion of polarization effects
by: Zuo, Zhili, et al.
Published: (2010)
by: Zuo, Zhili, et al.
Published: (2010)
Free energy calculations of glycosaminoglycan-protein interactions
by: Gandhi, Neha, et al.
Published: (2009)
by: Gandhi, Neha, et al.
Published: (2009)
Computational Methods for the Prediction of the Structure and Interactions of Coiled-Coil Peptides
by: Gandhi, Neha, et al.
Published: (2008)
by: Gandhi, Neha, et al.
Published: (2008)
The Structure of Glycosaminoglycans and their Interactions with Proteins
by: Gandhi, Neha, et al.
Published: (2008)
by: Gandhi, Neha, et al.
Published: (2008)
Molecular dynamics simulations of CXCL-8 and its interactions with a receptor peptide, heparin fragments and sulfated cyclitols.
by: Gandhi, Neha, et al.
Published: (2011)
by: Gandhi, Neha, et al.
Published: (2011)
Prediction of heparin binding sites in bone morphogenetic proteins (BMPs)
by: Gandhi, Neha, et al.
Published: (2012)
by: Gandhi, Neha, et al.
Published: (2012)
Molecular dynamics simulation of the phosphorylation-induced conformational changes of a tau peptide fragment
by: Lyons, Albert, et al.
Published: (2014)
by: Lyons, Albert, et al.
Published: (2014)
DREAM and C-fos proteins expression after treatment with Malaysian Mitragyna speciosa
by: Ali, Sumia R. Emhemed, et al.
Published: (2014)
by: Ali, Sumia R. Emhemed, et al.
Published: (2014)
Atomistic molecular dynamics simulations of bioactive engrailed 1 interference peptides (EN1-iPeps)
by: Gandhi, Neha, et al.
Published: (2018)
by: Gandhi, Neha, et al.
Published: (2018)
Angiotensin II stimulates expression of transcription factors c-Jun and c-Fos in cyclosporine induced human gingival fibroblasts
by: Subramani, Tamilselvan, et al.
Published: (2014)
by: Subramani, Tamilselvan, et al.
Published: (2014)
Understanding insulin endocrinology in decapod crustacea: Molecular modelling characterization of an insulin-binding protein and insulin-like peptides in the eastern spiny lobster, Sagmariasus verreauxi
by: Chandler, J., et al.
Published: (2017)
by: Chandler, J., et al.
Published: (2017)
Platelet endothelial cell adhesion molecule (PECAM-1) and its interactions with glycosaminoglycans 1. Molecular modelling studies
by: Gandhi, Neha, et al.
Published: (2008)
by: Gandhi, Neha, et al.
Published: (2008)
Molecular modelling of the interactions of complex carbohydrates with proteins
by: Gandhi, Neha Sureshchandra
Published: (2011)
by: Gandhi, Neha Sureshchandra
Published: (2011)
Developing drugs from sugars: current state of glycosaminoglycan-derived therapeutics
by: Gandhi, Neha, et al.
Published: (2012)
by: Gandhi, Neha, et al.
Published: (2012)
Heparin/heparan sulphate-based drugs
by: Gandhi, Neha, et al.
Published: (2010)
by: Gandhi, Neha, et al.
Published: (2010)
Can current force fields reproduce ring puckering in 2-O-sulfo-?-L-iduronic acid? A molecular dynamics simulation study
by: Gandhi, Neha, et al.
Published: (2010)
by: Gandhi, Neha, et al.
Published: (2010)
Free energy calculations of mutations involving a tightly bound water molecule and ligand substitutions in a ligand-protein complex
by: Garcia-sosa, A., et al.
Published: (2010)
by: Garcia-sosa, A., et al.
Published: (2010)
The effect of mephedrone and caffeine, and the influence of WAY-100635 on c-fos expression in the rat brain
by: Adam, Lucy
Published: (2022)
by: Adam, Lucy
Published: (2022)
The Effect of Minocycline on Spatial Learning and Memory
Performances and c-Fos Protein Expression in Hippocampus
of Lipopolysaccharides-Induced Neuroinflammation Rat Model
by: Mahamad Samsi, Fareedzul Amir, et al.
Published: (2017)
by: Mahamad Samsi, Fareedzul Amir, et al.
Published: (2017)
Computational analyses of the catalytic and heparin binding sites and their interactions with glycosaminoglycans in glycoside hydrolase family 79 endo-β-D-glucuronidase (heparanase)
by: Gandhi, Neha, et al.
Published: (2012)
by: Gandhi, Neha, et al.
Published: (2012)
Development and application of site mapping methods for the design of glycosaminoglycans
by: Agostino, Mark, et al.
Published: (2014)
by: Agostino, Mark, et al.
Published: (2014)
The relationship between protein and mrna expression of transcription repressor dream, c-fos and prodynorphin in modulating pain responses induced by formalin in the rat spinal cord.
by: Long, Idris
Published: (2011)
by: Long, Idris
Published: (2011)
Molecular dynamics simulation of tau peptides for the investigation of conformational changes induced by specific phosphorylation patterns
by: Gandhi, N., et al.
Published: (2017)
by: Gandhi, N., et al.
Published: (2017)
Macrocyclic peptides as inhibitors of protein-protein interactions
by: Smith, Frances
Published: (2020)
by: Smith, Frances
Published: (2020)
Structural changes of hippocampi and expression of HSP70, C-FOS and dream proteins in the spinal cord after acute thermal stimulus or early stress-experienced rats
by: Mat Taib, Che Norma
Published: (2014)
by: Mat Taib, Che Norma
Published: (2014)
Protein Kinase C-Delta C2 Domain Interactions in Breast Cancer
by: Khader, Rasha
Published: (2023)
by: Khader, Rasha
Published: (2023)
Molecular modeling of Bt Cry1Ac (DI-DII)-ASAL (Allium sativum lectin)-fusion protein and its interaction with aminopeptidase N (APN) receptor of Manduca sexta
by: Tajne, S., et al.
Published: (2012)
by: Tajne, S., et al.
Published: (2012)
Characterization of Sequence and Structural Features of the Candida krusei Enolase
by: Gandhi, Neha, et al.
Published: (2008)
by: Gandhi, Neha, et al.
Published: (2008)
The Biological and Biophysical Properties of the Spider Peptide Gomesin
by: Tanner, J., et al.
Published: (2018)
by: Tanner, J., et al.
Published: (2018)
Platelet endothelial cell adhesion molecule (PECAM-1) and its interactions with glycosaminoglycans 2. Biochemical analyses
by: Coombe, Deidre, et al.
Published: (2008)
by: Coombe, Deidre, et al.
Published: (2008)
Molecular modelling of platelet endothelial cell adhesion molecule 1 and its interaction with glycosaminoglycans
by: Gandhi, Neha Sureshchandra
Published: (2007)
by: Gandhi, Neha Sureshchandra
Published: (2007)
Molecular docking and structure-activity relationship studies on benzothiazole based non-peptidic BACE-1 inhibitors
by: Xu, W., et al.
Published: (2010)
by: Xu, W., et al.
Published: (2010)
The effect of substrate and enzyme concentration to the fructooligosaccharides (FOS) production
by: Rodianah, Alias
Published: (2009)
by: Rodianah, Alias
Published: (2009)
Production of fusion m13 phage bearing the di-sulphide constrained peptide sequence (C-WSFFSNI-C) that interacts with hepatitis B core antigen
by: Tey, Beng Ti, et al.
Published: (2009)
by: Tey, Beng Ti, et al.
Published: (2009)
Electrochemical strategies for the label-free detection of amino acids, peptides and proteins
by: Herzog, G., et al.
Published: (2007)
by: Herzog, G., et al.
Published: (2007)
Identification of a sub-micromolar, non-peptide inhibitor of β-secretase with low neural cytotoxicity through in silico screening
by: Xu, W., et al.
Published: (2010)
by: Xu, W., et al.
Published: (2010)
A comparative structural bioinformatics analysis of the insulin receptor family ectodomain based on phylogenetic information
by: Renteria, Miguel, et al.
Published: (2008)
by: Renteria, Miguel, et al.
Published: (2008)
Terrestrial-To-Satellite Interference In The C band: Tractable Calculation Technique
by: A., Hameed, et al.
Published: (2014)
by: A., Hameed, et al.
Published: (2014)
Calculation of the standard molal thermodynamic properties of crystalline peptides
by: LaRowe, D., et al.
Published: (2012)
by: LaRowe, D., et al.
Published: (2012)
Dissecting protein-protein interactions facilitating secretion of the virulence factor EspC by enteropathogenic Escherichia coli
by: Bishop, Keith
Published: (2009)
by: Bishop, Keith
Published: (2009)
Similar Items
-
Calculations of the free energy of interaction of the cFos-cJun coiled coil: effects of the solvation model and the inclusion of polarization effects
by: Zuo, Zhili, et al.
Published: (2010) -
Free energy calculations of glycosaminoglycan-protein interactions
by: Gandhi, Neha, et al.
Published: (2009) -
Computational Methods for the Prediction of the Structure and Interactions of Coiled-Coil Peptides
by: Gandhi, Neha, et al.
Published: (2008) -
The Structure of Glycosaminoglycans and their Interactions with Proteins
by: Gandhi, Neha, et al.
Published: (2008) -
Molecular dynamics simulations of CXCL-8 and its interactions with a receptor peptide, heparin fragments and sulfated cyclitols.
by: Gandhi, Neha, et al.
Published: (2011)