Fast, Practical Algorithms for Computing All the Repeats in a String

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Fast, Practical Algorithms for Computing All the Repeats in a String

Given a string x = x[1..n] on an alphabet of size α, and a threshold p min ≥ 1, we describe four variants of an algorithm PSY1 that, using a suffix array, computes all the complete nonextendible repeats in x of length p ≥ p min . The basic algorithm PSY1–1 and its simple extension PSY1–2 are fast on...

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Bibliographic Details
Main Authors:	Puglisi, Simon, Smyth, William, Yusufu, M.
Format:	Journal Article
Published:	Springer 2010
Subjects:	Repeat – Repetition – Suffix array – Suffix tree
Online Access:	http://hdl.handle.net/20.500.11937/36774

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