Fast, Practical Algorithms for Computing All the Repeats in a String

Given a string x = x[1..n] on an alphabet of size α, and a threshold p min ≥ 1, we describe four variants of an algorithm PSY1 that, using a suffix array, computes all the complete nonextendible repeats in x of length p ≥ p min . The basic algorithm PSY1–1 and its simple extension PSY1–2 are fast on...

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Bibliographic Details
Main Authors: Puglisi, Simon, Smyth, William, Yusufu, M.
Format: Journal Article
Published: Springer 2010
Subjects:
Online Access:http://hdl.handle.net/20.500.11937/36774