3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling

The Swiss-prot data-base was used for the protein sequence of Rhodococcus UKMP-5M. BlastP was used to determine the suitable template for homology modelling. Swiss Model is the homology modelling software was used to determine the 3D structure which passed the ProQ quality test for further analysis....

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Main Authors:	Yaakob, Nor Suhaila, Abdullah, Hasdianty, Mohamad, Rosfarizan, Ibrahim, Abdul Latif, Ariff, Arbakariya
Format:	Article
Language:	English
Published:	Hibiscus Publisher 2014
Online Access:	http://psasir.upm.edu.my/id/eprint/64042/ http://psasir.upm.edu.my/id/eprint/64042/ http://psasir.upm.edu.my/id/eprint/64042/1/3D%20protein%20structure%20prediction%20of%20Rhodococcus%20UKMP-5M%20phenol%20hydroxylase%20using%20homology%20modelling.pdf

id	upm-64042
recordtype	eprints
spelling	upm-640422018-06-08T00:58:43Z http://psasir.upm.edu.my/id/eprint/64042/ 3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling Yaakob, Nor Suhaila Abdullah, Hasdianty Mohamad, Rosfarizan Ibrahim, Abdul Latif Ariff, Arbakariya The Swiss-prot data-base was used for the protein sequence of Rhodococcus UKMP-5M. BlastP was used to determine the suitable template for homology modelling. Swiss Model is the homology modelling software was used to determine the 3D structure which passed the ProQ quality test for further analysis. Validation result for the predicted structure of Rhodococcus UKMP-5M, in which the prediction structure has passed the validation test with 5.951 Lgscore. This is lies in the range of extremely good model and 0.514 MaxSub which is lies in the range of very good model. Hibiscus Publisher 2014 Article PeerReviewed text en http://psasir.upm.edu.my/id/eprint/64042/1/3D%20protein%20structure%20prediction%20of%20Rhodococcus%20UKMP-5M%20phenol%20hydroxylase%20using%20homology%20modelling.pdf Yaakob, Nor Suhaila and Abdullah, Hasdianty and Mohamad, Rosfarizan and Ibrahim, Abdul Latif and Ariff, Arbakariya (2014) 3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling. Bioremediation Science & Technology Research, 2 (1). pp. 1-4. ISSN 2289-5892 https://journal.hibiscuspublisher.com/index.php/BSTR/article/view/58
repository_type	Digital Repository
institution_category	Local University
institution	Universiti Putra Malaysia
building	UPM Institutional Repository
collection	Online Access
language	English
description	The Swiss-prot data-base was used for the protein sequence of Rhodococcus UKMP-5M. BlastP was used to determine the suitable template for homology modelling. Swiss Model is the homology modelling software was used to determine the 3D structure which passed the ProQ quality test for further analysis. Validation result for the predicted structure of Rhodococcus UKMP-5M, in which the prediction structure has passed the validation test with 5.951 Lgscore. This is lies in the range of extremely good model and 0.514 MaxSub which is lies in the range of very good model.
format	Article
author	Yaakob, Nor Suhaila Abdullah, Hasdianty Mohamad, Rosfarizan Ibrahim, Abdul Latif Ariff, Arbakariya
spellingShingle	Yaakob, Nor Suhaila Abdullah, Hasdianty Mohamad, Rosfarizan Ibrahim, Abdul Latif Ariff, Arbakariya 3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
author_facet	Yaakob, Nor Suhaila Abdullah, Hasdianty Mohamad, Rosfarizan Ibrahim, Abdul Latif Ariff, Arbakariya
author_sort	Yaakob, Nor Suhaila
title	3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
title_short	3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
title_full	3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
title_fullStr	3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
title_full_unstemmed	3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling
title_sort	3d protein structure prediction of rhodococcus ukmp-5m phenol hydroxylase using homology modelling
publisher	Hibiscus Publisher
publishDate	2014
url	http://psasir.upm.edu.my/id/eprint/64042/ http://psasir.upm.edu.my/id/eprint/64042/ http://psasir.upm.edu.my/id/eprint/64042/1/3D%20protein%20structure%20prediction%20of%20Rhodococcus%20UKMP-5M%20phenol%20hydroxylase%20using%20homology%20modelling.pdf
first_indexed	2018-09-07T19:25:47Z
last_indexed	2018-09-07T19:25:47Z
_version_	1610978005274853376

3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling

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