CandidaDB: a genome database for Candida albicans pathogenomics

CandidaDB: a genome database for Candida albicans pathogenomics

CandidaDB is a database dedicated to the genome of the most prevalent systemic fungal pathogen of humans, Candida albicans. CandidaDB is based on an annotation of the Stanford Genome Technology Center C.albicans genome sequence data by the European Galar Fungail Consortium. CandidaDB Release 2.0 (Ju...

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Main Authors: d'Enfert, C., Goyard, S., Rodriguez-Arnaveilhe, S., Frangeul, L., Jones, L., Tekaia, F., Bader, O., Albrecht, Antje, Castillo, L., Dominguez, A., Ernst, J. F., Fradin, C., Gaillardin, C., Garcia-Sanchez, S., de Groot, P., Hube, B., Klis, F. M., Krishnamurthy, S., Kunze, D., Lopez, M.-C., Mavor, A., Martin, N., Moszer, I., Onésime, D., Martin, J. Perez, Sentandreu, R., Valentin, E., Brown, A. J. P.
Format: Online
Language:English
Published: Oxford University Press 2005
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540078/
id pubmed-540078
recordtype oai_dc
spelling pubmed-5400782005-01-04 CandidaDB: a genome database for Candida albicans pathogenomics d'Enfert, C. Goyard, S. Rodriguez-Arnaveilhe, S. Frangeul, L. Jones, L. Tekaia, F. Bader, O. Albrecht, Antje Castillo, L. Dominguez, A. Ernst, J. F. Fradin, C. Gaillardin, C. Garcia-Sanchez, S. de Groot, P. Hube, B. Klis, F. M. Krishnamurthy, S. Kunze, D. Lopez, M.-C. Mavor, A. Martin, N. Moszer, I. Onésime, D. Martin, J. Perez Sentandreu, R. Valentin, E. Brown, A. J. P. Articles CandidaDB is a database dedicated to the genome of the most prevalent systemic fungal pathogen of humans, Candida albicans. CandidaDB is based on an annotation of the Stanford Genome Technology Center C.albicans genome sequence data by the European Galar Fungail Consortium. CandidaDB Release 2.0 (June 2004) contains information pertaining to Assembly 19 of the genome of C.albicans strain SC5314. The current release contains 6244 annotated entries corresponding to 130 tRNA genes and 5917 protein-coding genes. For these, it provides tentative functional assignments along with numerous pre-run analyses that can assist the researcher in the evaluation of gene function for the purpose of specific or large-scale analysis. CandidaDB is based on GenoList, a generic relational data schema and a World Wide Web interface that has been adapted to the handling of eukaryotic genomes. The interface allows users to browse easily through genome data and retrieve information. CandidaDB also provides more elaborate tools, such as pattern searching, that are tightly connected to the overall browsing system. As the C.albicans genome is diploid and still incompletely assembled, CandidaDB provides tools to browse the genome by individual supercontigs and to examine information about allelic sequences obtained from complementary contigs. CandidaDB is accessible at http://genolist.pasteur.fr/CandidaDB. Oxford University Press 2005-01-01 2004-12-17 /pmc/articles/PMC540078/ /pubmed/15608215 http://dx.doi.org/10.1093/nar/gki124 Text en Copyright © 2005 Oxford University Press
repository_type Open Access Journal
institution_category Foreign Institution
institution US National Center for Biotechnology Information
building NCBI PubMed
collection Online Access
language English
format Online
author d'Enfert, C.
Goyard, S.
Rodriguez-Arnaveilhe, S.
Frangeul, L.
Jones, L.
Tekaia, F.
Bader, O.
Albrecht, Antje
Castillo, L.
Dominguez, A.
Ernst, J. F.
Fradin, C.
Gaillardin, C.
Garcia-Sanchez, S.
de Groot, P.
Hube, B.
Klis, F. M.
Krishnamurthy, S.
Kunze, D.
Lopez, M.-C.
Mavor, A.
Martin, N.
Moszer, I.
Onésime, D.
Martin, J. Perez
Sentandreu, R.
Valentin, E.
Brown, A. J. P.
spellingShingle d'Enfert, C.
Goyard, S.
Rodriguez-Arnaveilhe, S.
Frangeul, L.
Jones, L.
Tekaia, F.
Bader, O.
Albrecht, Antje
Castillo, L.
Dominguez, A.
Ernst, J. F.
Fradin, C.
Gaillardin, C.
Garcia-Sanchez, S.
de Groot, P.
Hube, B.
Klis, F. M.
Krishnamurthy, S.
Kunze, D.
Lopez, M.-C.
Mavor, A.
Martin, N.
Moszer, I.
Onésime, D.
Martin, J. Perez
Sentandreu, R.
Valentin, E.
Brown, A. J. P.
CandidaDB: a genome database for Candida albicans pathogenomics
author_facet d'Enfert, C.
Goyard, S.
Rodriguez-Arnaveilhe, S.
Frangeul, L.
Jones, L.
Tekaia, F.
Bader, O.
Albrecht, Antje
Castillo, L.
Dominguez, A.
Ernst, J. F.
Fradin, C.
Gaillardin, C.
Garcia-Sanchez, S.
de Groot, P.
Hube, B.
Klis, F. M.
Krishnamurthy, S.
Kunze, D.
Lopez, M.-C.
Mavor, A.
Martin, N.
Moszer, I.
Onésime, D.
Martin, J. Perez
Sentandreu, R.
Valentin, E.
Brown, A. J. P.
author_sort d'Enfert, C.
title CandidaDB: a genome database for Candida albicans pathogenomics
title_short CandidaDB: a genome database for Candida albicans pathogenomics
title_full CandidaDB: a genome database for Candida albicans pathogenomics
title_fullStr CandidaDB: a genome database for Candida albicans pathogenomics
title_full_unstemmed CandidaDB: a genome database for Candida albicans pathogenomics
title_sort candidadb: a genome database for candida albicans pathogenomics
description CandidaDB is a database dedicated to the genome of the most prevalent systemic fungal pathogen of humans, Candida albicans. CandidaDB is based on an annotation of the Stanford Genome Technology Center C.albicans genome sequence data by the European Galar Fungail Consortium. CandidaDB Release 2.0 (June 2004) contains information pertaining to Assembly 19 of the genome of C.albicans strain SC5314. The current release contains 6244 annotated entries corresponding to 130 tRNA genes and 5917 protein-coding genes. For these, it provides tentative functional assignments along with numerous pre-run analyses that can assist the researcher in the evaluation of gene function for the purpose of specific or large-scale analysis. CandidaDB is based on GenoList, a generic relational data schema and a World Wide Web interface that has been adapted to the handling of eukaryotic genomes. The interface allows users to browse easily through genome data and retrieve information. CandidaDB also provides more elaborate tools, such as pattern searching, that are tightly connected to the overall browsing system. As the C.albicans genome is diploid and still incompletely assembled, CandidaDB provides tools to browse the genome by individual supercontigs and to examine information about allelic sequences obtained from complementary contigs. CandidaDB is accessible at http://genolist.pasteur.fr/CandidaDB.
publisher Oxford University Press
publishDate 2005
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC540078/
_version_ 1611370298243809280

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