Brassica ASTRA: an integrated database for Brassica genomic research

Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotatio...

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Main Authors:	Love, Christopher G., Robinson, Andrew J., Lim, Geraldine A. C., Hopkins, Clare J., Batley, Jacqueline, Barker, Gary, Spangenberg, German C., Edwards, David
Format:	Online
Language:	English
Published:	Oxford University Press 2005
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539990/

id	pubmed-539990
recordtype	oai_dc
spelling	pubmed-5399902005-01-04 Brassica ASTRA: an integrated database for Brassica genomic research Love, Christopher G. Robinson, Andrew J. Lim, Geraldine A. C. Hopkins, Clare J. Batley, Jacqueline Barker, Gary Spangenberg, German C. Edwards, David Articles Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotations. Simple sequence repeat molecular markers are identified within resident sequences and mapped onto the closely related Arabidopsis genome sequence. Bacterial artificial chromosome (BAC) end sequences derived from the Multinational Brassica Genome Project are also mapped onto the Arabidopsis genome sequence enabling users to identify candidate Brassica BACs corresponding to syntenic regions of Arabidopsis. This information is maintained in a MySQL database with a web interface providing the primary means of interrogation. The database is accessible at http://hornbill.cspp.latrobe.edu.au. Oxford University Press 2005-01-01 2004-12-17 /pmc/articles/PMC539990/ /pubmed/15608282 http://dx.doi.org/10.1093/nar/gki036 Text en Copyright © 2005 Oxford University Press
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Love, Christopher G. Robinson, Andrew J. Lim, Geraldine A. C. Hopkins, Clare J. Batley, Jacqueline Barker, Gary Spangenberg, German C. Edwards, David
spellingShingle	Love, Christopher G. Robinson, Andrew J. Lim, Geraldine A. C. Hopkins, Clare J. Batley, Jacqueline Barker, Gary Spangenberg, German C. Edwards, David Brassica ASTRA: an integrated database for Brassica genomic research
author_facet	Love, Christopher G. Robinson, Andrew J. Lim, Geraldine A. C. Hopkins, Clare J. Batley, Jacqueline Barker, Gary Spangenberg, German C. Edwards, David
author_sort	Love, Christopher G.
title	Brassica ASTRA: an integrated database for Brassica genomic research
title_short	Brassica ASTRA: an integrated database for Brassica genomic research
title_full	Brassica ASTRA: an integrated database for Brassica genomic research
title_fullStr	Brassica ASTRA: an integrated database for Brassica genomic research
title_full_unstemmed	Brassica ASTRA: an integrated database for Brassica genomic research
title_sort	brassica astra: an integrated database for brassica genomic research
description	Brassica ASTRA is a public database for genomic information on Brassica species. The database incorporates expressed sequences with Swiss-Prot and GenBank comparative sequence annotation as well as secondary Gene Ontology (GO) annotation derived from the comparison with Arabidopsis TAIR GO annotations. Simple sequence repeat molecular markers are identified within resident sequences and mapped onto the closely related Arabidopsis genome sequence. Bacterial artificial chromosome (BAC) end sequences derived from the Multinational Brassica Genome Project are also mapped onto the Arabidopsis genome sequence enabling users to identify candidate Brassica BACs corresponding to syntenic regions of Arabidopsis. This information is maintained in a MySQL database with a web interface providing the primary means of interrogation. The database is accessible at http://hornbill.cspp.latrobe.edu.au.
publisher	Oxford University Press
publishDate	2005
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC539990/
_version_	1611370245520359424

Brassica ASTRA: an integrated database for Brassica genomic research

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