Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (...

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Main Authors:	Kappler, Ulrike, Davenport, Karen, Beatson, Scott, Lapidus, Alla, Pan, Chongle, Han, Cliff, Montero-Calasanz, Maria del Carmen, Land, Miriam, Hauser, Loren, Rohde, Manfred, Göker, Markus, Ivanova, Natalia, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C.
Format:	Online
Language:	English
Published:	BioMed Central 2016
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4891895/

id	pubmed-4891895
recordtype	oai_dc
spelling	pubmed-48918952016-06-04 Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T) Kappler, Ulrike Davenport, Karen Beatson, Scott Lapidus, Alla Pan, Chongle Han, Cliff Montero-Calasanz, Maria del Carmen Land, Miriam Hauser, Loren Rohde, Manfred Göker, Markus Ivanova, Natalia Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Extended Genome Report Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of the Piscirickettsiaceae to be published. The 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008. BioMed Central 2016-06-03 /pmc/articles/PMC4891895/ /pubmed/27274784 http://dx.doi.org/10.1186/s40793-016-0162-x Text en © The Author(s). 2016 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Kappler, Ulrike Davenport, Karen Beatson, Scott Lapidus, Alla Pan, Chongle Han, Cliff Montero-Calasanz, Maria del Carmen Land, Miriam Hauser, Loren Rohde, Manfred Göker, Markus Ivanova, Natalia Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C.
spellingShingle	Kappler, Ulrike Davenport, Karen Beatson, Scott Lapidus, Alla Pan, Chongle Han, Cliff Montero-Calasanz, Maria del Carmen Land, Miriam Hauser, Loren Rohde, Manfred Göker, Markus Ivanova, Natalia Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C. Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
author_facet	Kappler, Ulrike Davenport, Karen Beatson, Scott Lapidus, Alla Pan, Chongle Han, Cliff Montero-Calasanz, Maria del Carmen Land, Miriam Hauser, Loren Rohde, Manfred Göker, Markus Ivanova, Natalia Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C.
author_sort	Kappler, Ulrike
title	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
title_short	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
title_full	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
title_fullStr	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
title_full_unstemmed	Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)
title_sort	complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium thioalkalimicrobium cyclicum type strain alm 1 (dsm 14477t)
description	Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of the Piscirickettsiaceae to be published. The 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.
publisher	BioMed Central
publishDate	2016
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4891895/
_version_	1613588427476828160

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

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