Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework

Bibliographic Details
Main Authors:	Fang, Chih-Hao, Chang, Yu-Jung, Chung, Wei-Chun, Hsieh, Ping-Heng, Lin, Chung-Yen, Ho, Jan-Ming
Format:	Online
Language:	English
Published:	BioMed Central 2015
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4682372/

Similar Items

A de novo next generation genomic sequence assembler based on string graph and MapReduce cloud computing framework
by: Chang, Yu-Jung, et al.
Published: (2012)

Long Read Alignment with Parallel MapReduce Cloud Platform
by: Al-Absi, Ahmed Abdulhakim, et al.
Published: (2015)

CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce
by: Chung, Wei-Chun, et al.
Published: (2014)

Big data analysis solutions using mapReduce framework
by: Elagib, Sara B., et al.
Published: (2014)

Big Data Prediction Framework for Weather Temperature Based on MapReduce Algorithm
by: Khalid Adam, Ismail Hammad, et al.
Published: (2016)

Video concept detection using Hadoop MapReduce framework
by: Affendey, Lilly Suriani, et al.
Published: (2014)

Use of Mechanical Turk as a MapReduce Framework for Macular OCT Segmentation
by: Lee, Aaron Y., et al.
Published: (2016)

Fractal MapReduce decomposition of sequence alignment
by: Almeida, Jonas S, et al.
Published: (2012)

Meteorological Data Analysis Using MapReduce
by: Fang, Wei, et al.
Published: (2014)

Halvade: scalable sequence analysis with MapReduce
by: Decap, Dries, et al.
Published: (2015)

“At scale” author name matching with Hadoop/MapReduce
by: James, Powell, et al.
Published: (2012)

Efficient and Scalable Graph Similarity Joins in MapReduce
by: Chen, Yifan, et al.
Published: (2014)

Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data
by: Desai, Aarti, et al.
Published: (2013)

Mapreduce algorithm for weather dataset
by: Khalid Adam, Ismail Hammad
Published: (2017)

Pattern matching of signature-based IDS using Myers algorithm under MapReduce framework
by: Monther Aldwairi, et al.
Published: (2017-06-01)

Applications of the MapReduce programming framework to clinical big data analysis: current landscape and future trends
by: Mohammed, Emad A, et al.
Published: (2014)

Enabling Big Geoscience Data Analytics with a Cloud-Based, MapReduce-Enabled and Service-Oriented Workflow Framework
by: Li, Zhenlong, et al.
Published: (2015)

An intelligent approach to Big Data analytics for sustainable retail environment using Apriori-MapReduce framework
by: Neha, Verma, et al.
Published: (2017)

MRPR: a MapReduce solution for prototype reduction in big data classification
by: Triguero, Isaac, et al.
Published: (2015)

QoS oriented mapReduce optimization for hadoop based bigData application
by: Olanrewaju, Rashidah Funke, et al.
Published: (2014)

Indexing strategies of MapReduce for Information Retrieval in Big Data
by: Farid, Mazen, et al.
Published: (2016)

Nephele: genotyping via complete composition vectors and MapReduce
by: Colosimo, Marc E, et al.
Published: (2011)

A MapReduce-based Adjoint method for preventing brain disease
by: Manal Zettam, et al.
Published: (2018-08-01)

Utilizing MapReduce to Improve Probe-Car Track Data Mining
by: Li Zheng, et al.
Published: (2018-07-01)

MRPack: Multi-Algorithm Execution Using Compute-Intensive Approach in MapReduce
by: Idris, Muhammad, et al.
Published: (2015)

Mining Relation Reversals in the Evolution of SNOMED CT Using MapReduce
by: Tao, Shiqiang, et al.
Published: (2015)

Parallelizing Backpropagation Neural Network Using MapReduce and Cascading Model
by: Liu, Yang, et al.
Published: (2016)

A scalable neuroinformatics data flow for electrophysiological signals using MapReduce
by: Jayapandian, Catherine, et al.
Published: (2015)

Optimizing Information in Next-Generation-Sequencing (NGS) Reads for Improving De Novo Genome Assembly
by: Liu, Tsunglin, et al.
Published: (2013)

Compression of next-generation sequencing reads aided by highly efficient de novo assembly
by: Jones, Daniel C., et al.
Published: (2012)

Critical insight for MAPReduce optimization in Hadoop
by: Khan, Burhan Ul Islam, et al.
Published: (2014)

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly
by: Chen, Yen-Chun, et al.
Published: (2013)

ScanIndel: a hybrid framework for indel detection via gapped alignment, split reads and de novo assembly
by: Yang, Rendong, et al.
Published: (2015)

Big Data: A Parallel Particle Swarm Optimization-Back-Propagation Neural Network Algorithm Based on MapReduce
by: Cao, Jianfang, et al.
Published: (2016)

De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping
by: Olsen, Remi-Andre, et al.
Published: (2015)

CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping
by: Nguyen, Tung, et al.
Published: (2011)

3D fabric dynamic simulation based on Mapreduce
by: Hengliang, Shi, et al.
Published: (2015)

Meraculous: De Novo Genome Assembly with Short Paired-End Reads
by: Chapman, Jarrod A., et al.
Published: (2011)

Hybrid error correction and de novo assembly of single-molecule sequencing reads
by: Koren, Sergey, et al.
Published: (2012)

Optimizing de novo assembly of short-read RNA-seq data for phylogenomics
by: Yang, Ya, et al.
Published: (2013)