Publishing and sharing multi-dimensional image data with OMERO

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquis...

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Main Authors:	Burel, Jean-Marie, Besson, Sébastien, Blackburn, Colin, Carroll, Mark, Ferguson, Richard K., Flynn, Helen, Gillen, Kenneth, Leigh, Roger, Li, Simon, Lindner, Dominik, Linkert, Melissa, Moore, William J., Ramalingam, Balaji, Rozbicki, Emil, Tarkowska, Aleksandra, Walczysko, Petr, Allan, Chris, Moore, Josh, Swedlow, Jason R.
Format:	Online
Language:	English
Published:	Springer US 2015
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602067/

id	pubmed-4602067
recordtype	oai_dc
spelling	pubmed-46020672015-10-16 Publishing and sharing multi-dimensional image data with OMERO Burel, Jean-Marie Besson, Sébastien Blackburn, Colin Carroll, Mark Ferguson, Richard K. Flynn, Helen Gillen, Kenneth Leigh, Roger Li, Simon Lindner, Dominik Linkert, Melissa Moore, William J. Ramalingam, Balaji Rozbicki, Emil Tarkowska, Aleksandra Walczysko, Petr Allan, Chris Moore, Josh Swedlow, Jason R. Article Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO’s Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org. Springer US 2015-07-30 2015 /pmc/articles/PMC4602067/ /pubmed/26223880 http://dx.doi.org/10.1007/s00335-015-9587-6 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Burel, Jean-Marie Besson, Sébastien Blackburn, Colin Carroll, Mark Ferguson, Richard K. Flynn, Helen Gillen, Kenneth Leigh, Roger Li, Simon Lindner, Dominik Linkert, Melissa Moore, William J. Ramalingam, Balaji Rozbicki, Emil Tarkowska, Aleksandra Walczysko, Petr Allan, Chris Moore, Josh Swedlow, Jason R.
spellingShingle	Burel, Jean-Marie Besson, Sébastien Blackburn, Colin Carroll, Mark Ferguson, Richard K. Flynn, Helen Gillen, Kenneth Leigh, Roger Li, Simon Lindner, Dominik Linkert, Melissa Moore, William J. Ramalingam, Balaji Rozbicki, Emil Tarkowska, Aleksandra Walczysko, Petr Allan, Chris Moore, Josh Swedlow, Jason R. Publishing and sharing multi-dimensional image data with OMERO
author_facet	Burel, Jean-Marie Besson, Sébastien Blackburn, Colin Carroll, Mark Ferguson, Richard K. Flynn, Helen Gillen, Kenneth Leigh, Roger Li, Simon Lindner, Dominik Linkert, Melissa Moore, William J. Ramalingam, Balaji Rozbicki, Emil Tarkowska, Aleksandra Walczysko, Petr Allan, Chris Moore, Josh Swedlow, Jason R.
author_sort	Burel, Jean-Marie
title	Publishing and sharing multi-dimensional image data with OMERO
title_short	Publishing and sharing multi-dimensional image data with OMERO
title_full	Publishing and sharing multi-dimensional image data with OMERO
title_fullStr	Publishing and sharing multi-dimensional image data with OMERO
title_full_unstemmed	Publishing and sharing multi-dimensional image data with OMERO
title_sort	publishing and sharing multi-dimensional image data with omero
description	Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO’s Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org.
publisher	Springer US
publishDate	2015
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602067/
_version_	1613486711756554240

Publishing and sharing multi-dimensional image data with OMERO

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