Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆

We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interfa...

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Main Authors:	Hulstaert, Niels, Reisinger, Florian, Rameseder, Jonathan, Barsnes, Harald, Vizcaíno, Juan Antonio, Martens, Lennart
Format:	Online
Language:	English
Published:	Elsevier 2013
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085470/

id	pubmed-4085470
recordtype	oai_dc
spelling	pubmed-40854702014-07-09 Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆ Hulstaert, Niels Reisinger, Florian Rameseder, Jonathan Barsnes, Harald Vizcaíno, Juan Antonio Martens, Lennart Technical Note We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics. Elsevier 2013-12-16 /pmc/articles/PMC4085470/ /pubmed/23603108 http://dx.doi.org/10.1016/j.jprot.2013.04.011 Text en © 2013 Elsevier B.V. http://creativecommons.org/licenses/by/3.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/3.0/).
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Hulstaert, Niels Reisinger, Florian Rameseder, Jonathan Barsnes, Harald Vizcaíno, Juan Antonio Martens, Lennart
spellingShingle	Hulstaert, Niels Reisinger, Florian Rameseder, Jonathan Barsnes, Harald Vizcaíno, Juan Antonio Martens, Lennart Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
author_facet	Hulstaert, Niels Reisinger, Florian Rameseder, Jonathan Barsnes, Harald Vizcaíno, Juan Antonio Martens, Lennart
author_sort	Hulstaert, Niels
title	Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
title_short	Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
title_full	Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
title_fullStr	Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
title_full_unstemmed	Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆
title_sort	pride-asap: automatic fragment ion annotation of identified pride spectra☆
description	We present an open source software application and library written in Java that provides a uniform annotation of identified spectra stored in the PRIDE database. Pride-asap can be ran in a command line mode for automated processing of multiple PRIDE experiments, but also has a graphical user interface that allows end users to annotate the spectra in PRIDE experiments and to inspect the results in detail. Pride-asap binaries, source code and additional information can be downloaded from http://pride-asa-pipeline.googlecode.com.This article is part of a Special Issue entitled: Standardization and Quality Control in Proteomics.
publisher	Elsevier
publishDate	2013
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4085470/
_version_	1613109508504027136

Pride-asap: Automatic fragment ion annotation of identified PRIDE spectra☆

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