Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
Biological systems are inherently hierarchal and multiscale in time and space. A major challenge of systems biology is to describe biological systems as a computational model, which can be used to derive novel hypothesis and drive experiments leading to new knowledge. The constraint-based reconstruc...
Main Authors: | Thiele, Ines, Fleming, Ronan M. T., Que, Richard, Bordbar, Aarash, Diep, Dinh, Palsson, Bernhard O. |
---|---|
Format: | Online |
Language: | English |
Published: |
Public Library of Science
2012
|
Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3461016/ |
Similar Items
-
Evolution of codon usage in bacteria
by: Henry, Ian
Published: (2007) -
iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states
by: Bordbar, Aarash, et al.
Published: (2011) -
Robust flux balance analysis of multiscale biochemical reaction networks
by: Sun, Yuekai, et al.
Published: (2013) -
Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage
by: Rudorf, Sophia, et al.
Published: (2015) -
A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism
by: Mih, Nathan, et al.
Published: (2016)