BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools

BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools

Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss...

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Main Authors: Vangala, Rajani Kanth, Singh, Lucky, Gupta, Ravi Prakash
Format: Online
Language:English
Published: Biomedical Informatics 2012
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400990/
id pubmed-3400990
recordtype oai_dc
spelling pubmed-34009902012-07-24 BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools Vangala, Rajani Kanth Singh, Lucky Gupta, Ravi Prakash Server Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss of time and cost. We herein have made platform which integrates the tools in a way that the output of one program can be directly used as input of another and does not need any modifications. Tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research; therefore we initially tried to integrate these tools. BioParisodhana platform optimizes the time spend in browsing and downloading applications and is an interactive, effective and user friendly. Biomedical Informatics 2012-07-06 /pmc/articles/PMC3400990/ /pubmed/22829746 http://dx.doi.org/10.6026/97320630008639 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
repository_type Open Access Journal
institution_category Foreign Institution
institution US National Center for Biotechnology Information
building NCBI PubMed
collection Online Access
language English
format Online
author Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
spellingShingle Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
author_facet Vangala, Rajani Kanth
Singh, Lucky
Gupta, Ravi Prakash
author_sort Vangala, Rajani Kanth
title BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_short BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_full BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_fullStr BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_full_unstemmed BioParishodhana: A novel graphical interface integrating BLAST, ClustalW, primer3 and restriction digestion tools
title_sort bioparishodhana: a novel graphical interface integrating blast, clustalw, primer3 and restriction digestion tools
description Bioinformatics has emerged as an integral part of life sciences and biomedical research. The bioinformatics tools developed so far exist individually and do not cross talk leading biologists to spend more time in formatting the output from one tool as input for another tool. This leads to huge loss of time and cost. We herein have made platform which integrates the tools in a way that the output of one program can be directly used as input of another and does not need any modifications. Tools for similarity search, primer designing, and restriction enzyme digestion are required in almost all biological research; therefore we initially tried to integrate these tools. BioParisodhana platform optimizes the time spend in browsing and downloading applications and is an interactive, effective and user friendly.
publisher Biomedical Informatics
publishDate 2012
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3400990/
_version_ 1611544196758372352

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