PaGeFinder: quantitative identification of spatiotemporal pattern genes

Summary: Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispers...

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Main Authors:	Pan, Jian-Bo, Hu, Shi-Chang, Wang, Hao, Zou, Quan, Ji, Zhi-Liang
Format:	Online
Language:	English
Published:	Oxford University Press 2012
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3356841/

id	pubmed-3356841
recordtype	oai_dc
spelling	pubmed-33568412012-05-21 PaGeFinder: quantitative identification of spatiotemporal pattern genes Pan, Jian-Bo Hu, Shi-Chang Wang, Hao Zou, Quan Ji, Zhi-Liang Applications Note Summary: Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns. Oxford University Press 2012-06-01 2012-04-06 /pmc/articles/PMC3356841/ /pubmed/22492640 http://dx.doi.org/10.1093/bioinformatics/bts169 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Pan, Jian-Bo Hu, Shi-Chang Wang, Hao Zou, Quan Ji, Zhi-Liang
spellingShingle	Pan, Jian-Bo Hu, Shi-Chang Wang, Hao Zou, Quan Ji, Zhi-Liang PaGeFinder: quantitative identification of spatiotemporal pattern genes
author_facet	Pan, Jian-Bo Hu, Shi-Chang Wang, Hao Zou, Quan Ji, Zhi-Liang
author_sort	Pan, Jian-Bo
title	PaGeFinder: quantitative identification of spatiotemporal pattern genes
title_short	PaGeFinder: quantitative identification of spatiotemporal pattern genes
title_full	PaGeFinder: quantitative identification of spatiotemporal pattern genes
title_fullStr	PaGeFinder: quantitative identification of spatiotemporal pattern genes
title_full_unstemmed	PaGeFinder: quantitative identification of spatiotemporal pattern genes
title_sort	pagefinder: quantitative identification of spatiotemporal pattern genes
description	Summary: Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns.
publisher	Oxford University Press
publishDate	2012
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3356841/
_version_	1611531453356572672

PaGeFinder: quantitative identification of spatiotemporal pattern genes

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