BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments

Bibliographic Details
Main Authors:	Consiglio, Arianna, Carella, Massimo, De Caro, Giorgio, Delle Foglie, Gianfranco, Giovannelli, Candida, Grillo, Giorgio, Ianigro, Massimo, Licciulli, Flavio, Palumbo, Orazio, Piepoli, Ada, Ranieri, Elena, Liuni, Sabino
Format:	Online
Language:	English
Published:	BioMed Central 2012
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3314565/

Similar Items

Experimental Comparison and Evaluation of the Affymetrix Exon and U133Plus2 GeneChip Arrays
by: Abdueva, Diana, et al.
Published: (2007)

X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
by: Yates, Tim, et al.
Published: (2008)

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
by: Okoniewski, Michał J, et al.
Published: (2007)

Probe Selection and Expression Index Computation of Affymetrix Exon Arrays
by: Xing, Yi, et al.
Published: (2006)

Explaining differences in saturation levels for Affymetrix GeneChip® arrays
by: Skvortsov, Dmitriy, et al.
Published: (2007)

Clinical applications of Affymetrix Genechip arrays for RNA and DNA analysis
by: Russell, I
Published: (2003)

Comparison of Two Methods for Detecting Alternative Splice Variants Using GeneChip® Exon Arrays
by: Fan, Wenhong, et al.
Published: (2011)

Development of detection method for novel fusion gene using GeneChip exon array
by: Wada, Yusaku, et al.
Published: (2014)

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies
by: Laajala, Essi, et al.
Published: (2009)

Exon array data analysis using Affymetrix power tools and R statistical software
by: Lockstone, Helen E.
Published: (2011)

Comparison of Nasal Epithelial Smoking-Induced Gene Expression on Affymetrix Exon 1.0 and Gene 1.0 ST Arrays
by: Zhang, Xiaoling, et al.
Published: (2013)

Reproducible probe-level analysis of the Affymetrix Exon 1.0 ST array with R/Bioconductor
by: Rodrigo-Domingo, Maria, et al.
Published: (2014)

The chemiluminescence based Ziplex® automated workstation focus array reproduces ovarian cancer Affymetrix GeneChip® expression profiles
by: Quinn, Michael CJ, et al.
Published: (2009)

AffyMAPSDetector: a software tool to characterize Affymetrix GeneChip™ expression arrays with respect to SNPs
by: Kumari, Sunita, et al.
Published: (2007)

Assessment of the relationship between signal intensities and transcript concentration for Affymetrix GeneChip® arrays
by: Chudin, Eugene, et al.
Published: (2002)

Exon arrays provide accurate assessments of gene expression
by: Kapur, Karen, et al.
Published: (2007)

Assessing affymetrix GeneChip microarray quality
by: McCall, Matthew N, et al.
Published: (2011)

Genotyping and annotation of Affymetrix SNP arrays
by: Lamy, Philippe, et al.
Published: (2006)

Non-linear analysis of GeneChip arrays
by: Abdueva, Diana, et al.
Published: (2006)

Algorithms for differential splicing detection using exon arrays: a comparative assessment
by: Zimmermann, Karin, et al.
Published: (2015)

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
by: Kirov, George, et al.
Published: (2006)

A comparison of Affymetrix gene expression arrays
by: Robinson, Mark D, et al.
Published: (2007)

Hybridization and amplification rate correction for affymetrix SNP arrays
by: Wang, Quan, et al.
Published: (2012)

Rawcopy: Improved copy number analysis with Affymetrix arrays
by: Mayrhofer, Markus, et al.
Published: (2016)

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips
by: van Ruissen, Fred, et al.
Published: (2005)

A reanalysis of a published Affymetrix GeneChip control dataset
by: Dabney, Alan R, et al.
Published: (2006)

Interpretation of multiple probe sets mapping to the same gene in Affymetrix GeneChips
by: Stalteri, Maria A, et al.
Published: (2007)

Comparison of target labeling methods for use with Affymetrix GeneChips
by: Lonergan, William, et al.
Published: (2007)

Feature-level exploration of a published Affymetrix GeneChip control dataset
by: Irizarry, Rafael A, et al.
Published: (2006)

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChips
by: Harrison, Andrew P, et al.
Published: (2007)

BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
by: Turro, Ernest, et al.
Published: (2007)

Motif effects in Affymetrix GeneChips seriously affect probe intensities
by: Upton, Graham J. G., et al.
Published: (2012)

Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array
by: Hu, Nan, et al.
Published: (2006)

JuncDB: an exon–exon junction database
by: Chorev, Michal, et al.
Published: (2016)

Detection of internal exon deletion with exon Del
by: Guo, Yan, et al.
Published: (2014)

Integrating probe-level expression changes across generations of Affymetrix arrays
by: Elo, Laura L., et al.
Published: (2005)

ArrayInitiative - a tool that simplifies creating custom Affymetrix CDFs
by: Overall, Christopher C, et al.
Published: (2011)

A fuzzy method for RNA-Seq differential expression analysis in presence of multireads
by: Consiglio, Arianna, et al.
Published: (2016)

Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer
by: Disciglio, Vittoria, et al.
Published: (2016)

Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology
by: Pillmann, Holger, et al.
Published: (2011)