Studying Interactions by Molecular Dynamics Simulations at High Concentration
Molecular dynamics simulations have been used to study molecular encounters and recognition. In recent works, simulations using high concentration of interacting molecules have been performed. In this paper, we consider the practical problems for setting up the simulation and to analyse the results...
Main Authors: | Fogolari, Federico, Corazza, Alessandra, Toppo, Stefano, Tosatto, Silvio C. E., Viglino, Paolo, Ursini, Fulvio, Esposito, Gennaro |
---|---|
Format: | Online |
Language: | English |
Published: |
Hindawi Publishing Corporation
2012
|
Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303702/ |
Similar Items
-
Fast structure similarity searches among protein models: efficient clustering of protein fragments
by: Fogolari, Federico, et al.
Published: (2012) -
Scoring predictive models using a reduced representation of proteins: model and energy definition
by: Fogolari, Federico, et al.
Published: (2007) -
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii
by: Fogolari, Federico, et al.
Published: (2012) -
Distance-Based Configurational Entropy of Proteins from Molecular Dynamics Simulations
by: Fogolari, Federico, et al.
Published: (2015) -
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators
by: Fogolari, Federico, et al.
Published: (2005)