Integrative Cancer Genomics (IntOGen) in Biomart

Recently, we created IntOGen, a resource to integrate a large amount of cancer genomic data. IntOGen aims at facilitating the detection of the most recurrent alterations that drive tumorigenesis. It collates, annotates and analyzes high-throughput data about transcriptional, genomic and mutational c...

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Main Authors:	Perez-Llamas, Christian, Gundem, Gunes, Lopez-Bigas, Nuria
Format:	Online
Language:	English
Published:	Oxford University Press 2011
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169995/

id	pubmed-3169995
recordtype	oai_dc
spelling	pubmed-31699952011-09-09 Integrative Cancer Genomics (IntOGen) in Biomart Perez-Llamas, Christian Gundem, Gunes Lopez-Bigas, Nuria Original Article Recently, we created IntOGen, a resource to integrate a large amount of cancer genomic data. IntOGen aims at facilitating the detection of the most recurrent alterations that drive tumorigenesis. It collates, annotates and analyzes high-throughput data about transcriptional, genomic and mutational changes taking place in tumors from different studies annotated with specific cancer types. Currently, it contains 118 studies for mRNA expression profiling and 188 studies for genomic alterations covering in total 64 different tumor topographies. In this article, we describe the Biomart portal for IntOGen. The portal provides easy access to different types of data and facilitates the bulk download of all the analysis results. Here, we describe the general features of IntOGen and give example queries to demonstrate its use. Oxford University Press 2011-09-07 /pmc/articles/PMC3169995/ /pubmed/21903633 http://dx.doi.org/10.1093/database/bar039 Text en © The Author(s) 2011. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/2.5 This is Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Perez-Llamas, Christian Gundem, Gunes Lopez-Bigas, Nuria
spellingShingle	Perez-Llamas, Christian Gundem, Gunes Lopez-Bigas, Nuria Integrative Cancer Genomics (IntOGen) in Biomart
author_facet	Perez-Llamas, Christian Gundem, Gunes Lopez-Bigas, Nuria
author_sort	Perez-Llamas, Christian
title	Integrative Cancer Genomics (IntOGen) in Biomart
title_short	Integrative Cancer Genomics (IntOGen) in Biomart
title_full	Integrative Cancer Genomics (IntOGen) in Biomart
title_fullStr	Integrative Cancer Genomics (IntOGen) in Biomart
title_full_unstemmed	Integrative Cancer Genomics (IntOGen) in Biomart
title_sort	integrative cancer genomics (intogen) in biomart
description	Recently, we created IntOGen, a resource to integrate a large amount of cancer genomic data. IntOGen aims at facilitating the detection of the most recurrent alterations that drive tumorigenesis. It collates, annotates and analyzes high-throughput data about transcriptional, genomic and mutational changes taking place in tumors from different studies annotated with specific cancer types. Currently, it contains 118 studies for mRNA expression profiling and 188 studies for genomic alterations covering in total 64 different tumor topographies. In this article, we describe the Biomart portal for IntOGen. The portal provides easy access to different types of data and facilitates the bulk download of all the analysis results. Here, we describe the general features of IntOGen and give example queries to demonstrate its use.
publisher	Oxford University Press
publishDate	2011
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3169995/
_version_	1611474668432130048

Integrative Cancer Genomics (IntOGen) in Biomart

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