Genomic characteristics of cattle copy number variations

Genomic characteristics of cattle copy number variations

Bibliographic Details
Main Authors:	Hou, Yali, Liu, George E, Bickhart, Derek M, Cardone, Maria Francesca, Wang, Kai, Kim, Eui-soo, Matukumalli, Lakshmi K, Ventura, Mario, Song, Jiuzhou, VanRaden, Paul M, Sonstegard, Tad S, Van Tassell, Curt P
Format:	Online
Language:	English
Published:	BioMed Central 2011
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3053260/

Similar Items

Population-genetic properties of differentiated copy number variations in cattle
by: Xu, Lingyang, et al.
Published: (2016)

Genome wide CNV analysis reveals additional variants associated with milk production traits in Holsteins
by: Xu, Lingyang, et al.
Published: (2014)

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle
by: Bickhart, Derek M., et al.
Published: (2016)

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array
by: Hou, Yali, et al.
Published: (2012)

Comparative analyses across cattle genders and breeds reveal the pitfalls caused by false positive and lineage-differential copy number variations
by: Zhou, Yang, et al.
Published: (2016)

Identification of a Nonsense Mutation in CWC15 Associated with Decreased Reproductive Efficiency in Jersey Cattle
by: Sonstegard, Tad S., et al.
Published: (2013)

Genomic divergences among cattle, dog and human estimated from large-scale alignments of genomic sequences
by: Liu, George E, et al.
Published: (2006)

Fine Mapping for Weaver Syndrome in Brown Swiss Cattle and the Identification of 41 Concordant Mutations across NRCAM, PNPLA8 and CTTNBP2
by: McClure, Matthew, et al.
Published: (2013)

The Relationship between Runs of Homozygosity and Inbreeding in Jersey Cattle under Selection
by: Kim, Eui-Soo, et al.
Published: (2015)

Genomic predictions combining SNP markers and copy number variations in Nellore cattle
by: El Hamidi A. Hay, et al.
Published: (2018-06-01)

A Validated Genome Wide Association Study to Breed Cattle Adapted to an Environment Altered by Climate Change
by: Hayes, Ben J., et al.
Published: (2009)

Bovine Exome Sequence Analysis and Targeted SNP Genotyping of Recessive Fertility Defects BH1, HH2, and HH3 Reveal a Putative Causative Mutation in SMC2 for HH3
by: McClure, Matthew C., et al.
Published: (2014)

Recent artificial selection in U.S. Jersey cattle impacts autozygosity levels of specific genomic regions
by: Kim, Eui-Soo, et al.
Published: (2015)

High Density LD-Based Structural Variations Analysis in Cattle Genome
by: Salomon-Torres, Ricardo, et al.
Published: (2014)

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle
by: Kim, Eui-Soo, et al.
Published: (2013)

Improvement of Prediction Ability for Genomic Selection of Dairy Cattle by Including Dominance Effects
by: Sun, Chuanyu, et al.
Published: (2014)

Increasing Long-Term Response by Selecting for Favorable Minor Alleles
by: Sun, Chuanyu, et al.
Published: (2014)

Assessing signatures of selection through variation in linkage disequilibrium between taurine and indicine cattle
by: Pérez O’Brien, Ana M, et al.
Published: (2014)

Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping
by: Porto-Neto, Laercio R, et al.
Published: (2013)

Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 Promoter
by: Liu, George E., et al.
Published: (2008)

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data
by: Xu, Lingyang, et al.
Published: (2013)

Genome-wide association study and ancestral origins of the slick-hair coat in tropically adapted cattle
by: Huson, Heather J., et al.
Published: (2014)

Dissection of additive, dominance, and imprinting effects for production and reproduction traits in Holstein cattle
by: Jicai Jiang, et al.
Published: (2017-05-01)

Evolutionary and Functional Features of Copy Number Variation in the Cattle Genome
by: Keel, Brittney N., et al.
Published: (2016)

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis
by: Ma, Li, et al.
Published: (2015)

Identification of Candidate Transcription Factor Binding Sites in the Cattle Genome
by: Bickhart, Derek M., et al.
Published: (2013)

Accuracy of genotype imputation in Nelore cattle
by: Carvalheiro, Roberto, et al.
Published: (2014)

Genome-Wide Scan of Gastrointestinal Nematode Resistance in Closed Angus Population Selected for Minimized Influence of MHC
by: Kim, Eui-Soo, et al.
Published: (2015)

Detecting Loci under Recent Positive Selection in Dairy and Beef Cattle by Combining Different Genome-Wide Scan Methods
by: Utsunomiya, Yuri Tani, et al.
Published: (2013)

Design of a Bovine Low-Density SNP Array Optimized for Imputation
by: Boichard, Didier, et al.
Published: (2012)

Fast imputation using medium or low-coverage sequence data
by: VanRaden, Paul M., et al.
Published: (2015)

Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parental Verification
by: McClure, Matthew, et al.
Published: (2012)

Interactive analysis of large cancer copy number studies with Copy Number Explorer
by: Newman, Scott
Published: (2015)

A Computational Framework Discovers New Copy Number Variants with Functional Importance
by: Banerjee, Samprit, et al.
Published: (2011)

Copy number variations and stroke
by: Colaianni, Valeria, et al.
Published: (2016)

Whole genome linkage disequilibrium maps in cattle
by: McKay, Stephanie D, et al.
Published: (2007)

Male infertility and copy number variants (CNVs) in the dog: a two-pronged approach using Computer Assisted Sperm Analysis (CASA) and Fluorescent In Situ Hybridization (FISH)
by: Cassatella, Daniele, et al.
Published: (2013)

Large multi-allelic copy number variations in humans
by: Handsaker, Robert E., et al.
Published: (2015)

Integrated metabolomic and transcriptome analyses reveal finishing forage affects metabolic pathways related to beef quality and animal welfare
by: Carrillo, José A., et al.
Published: (2016)

Genome-Wide Copy Number Variant Analysis in Inbred Chickens Lines With Different Susceptibility to Marek’s Disease
by: Luo, Juan, et al.
Published: (2013)