PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments

We describe Protogene, a server that can turn a protein multiple sequence alignment into the equivalent alignment of the original gene coding DNA. Protogene relies on a pipeline where every initial protein sequence is BLASTed against RefSeq or NR. The annotation associated with potential matches is...

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Bibliographic Details
Main Authors: Moretti, Sébastien, Reinier, Frédéric, Poirot, Olivier, Armougom, Fabrice, Audic, Stéphane, Keduas, Vladimir, Notredame, Cédric
Format: Online
Language:English
Published: Oxford University Press 2006
Online Access:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538918/