Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles

In this study, we describe a web server that performs computations on DNA melting, thus predicting the localized separation of the two strands for sequences provided by the users. The output types are stitch profiles, melting curves, probability profiles, etc. Stitch profile diagrams visualize the e...

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Main Authors:	Tøstesen, Eivind, Jerstad, Geir Ivar, Hovig, Eivind
Format:	Online
Language:	English
Published:	Oxford University Press 2005
Online Access:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160185/

id	pubmed-1160185
recordtype	oai_dc
spelling	pubmed-11601852005-06-29 Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles Tøstesen, Eivind Jerstad, Geir Ivar Hovig, Eivind Article In this study, we describe a web server that performs computations on DNA melting, thus predicting the localized separation of the two strands for sequences provided by the users. The output types are stitch profiles, melting curves, probability profiles, etc. Stitch profile diagrams visualize the ensemble of alternative conformations that DNA can adopt with different probabilities. For example, a stitch profile shows the possible loop openings in terms of their locations, sizes, probabilities and fluctuations at a given temperature. Sequences with lengths up to several tens or hundreds of kilobase pairs can be analysed. The tools are freely available at . Oxford University Press 2005-07-01 2005-06-27 /pmc/articles/PMC1160185/ /pubmed/15980539 http://dx.doi.org/10.1093/nar/gki424 Text en © The Author 2005. Published by Oxford University Press. All rights reserved
repository_type	Open Access Journal
institution_category	Foreign Institution
institution	US National Center for Biotechnology Information
building	NCBI PubMed
collection	Online Access
language	English
format	Online
author	Tøstesen, Eivind Jerstad, Geir Ivar Hovig, Eivind
spellingShingle	Tøstesen, Eivind Jerstad, Geir Ivar Hovig, Eivind Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
author_facet	Tøstesen, Eivind Jerstad, Geir Ivar Hovig, Eivind
author_sort	Tøstesen, Eivind
title	Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
title_short	Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
title_full	Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
title_fullStr	Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
title_full_unstemmed	Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles
title_sort	stitchprofiles.uio.no: analysis of partly melted dna conformations using stitch profiles
description	In this study, we describe a web server that performs computations on DNA melting, thus predicting the localized separation of the two strands for sequences provided by the users. The output types are stitch profiles, melting curves, probability profiles, etc. Stitch profile diagrams visualize the ensemble of alternative conformations that DNA can adopt with different probabilities. For example, a stitch profile shows the possible loop openings in terms of their locations, sizes, probabilities and fluctuations at a given temperature. Sequences with lengths up to several tens or hundreds of kilobase pairs can be analysed. The tools are freely available at .
publisher	Oxford University Press
publishDate	2005
url	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1160185/
_version_	1611375455061934080

Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles

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