Genetically improved BarraCUDA

Genetically improved BarraCUDA

Abstract Background BarraCUDA is an open source C program which uses the BWA algorithm in parallel with nVidia CUDA to align short next generation DNA sequences against a reference genome. Recently its source code was optimised using “Genetic Improvement”. Results The genetically improved (GI) code...

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Bibliographic Details
Main Authors: W. B. Langdon, Brian Yee Hong Lam
Format: Article
Language:English
Published: BioMed Central 2017-08-01
Series:BioData Mining
Subjects:
GPGPU
Parallel computing
Genetic improvement
Double-ended DNA sequence
Nextgen NGS
Online Access:http://link.springer.com/article/10.1186/s13040-017-0149-1

Internet

http://link.springer.com/article/10.1186/s13040-017-0149-1

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