A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution

Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustif...

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Main Authors:	Hane, James, Ming, Y., Kamphuis, L., Nelson, M., Garg, G., Atkins, C., Bayer, P., Bravo, A., Bringans, S., Cannon, S., Edwards, D., Foley, R., Gao, L., Harrison, M., Huang, W., Hurgobin, B., Li, S., Liu, C., McGrath, A., Morahan, G., Murray, J., Weller, J., Jian, J., Singh, K.
Format:	Journal Article
Published:	2016
Online Access:	http://hdl.handle.net/20.500.11937/14054

id	curtin-20.500.11937-14054
recordtype	eprints
spelling	curtin-20.500.11937-140542017-09-13T16:11:35Z A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution Hane, James Ming, Y. Kamphuis, L. Nelson, M. Garg, G. Atkins, C. Bayer, P. Bravo, A. Bringans, S. Cannon, S. Edwards, D. Foley, R. Gao, L. Harrison, M. Huang, W. Hurgobin, B. Li, S. Liu, C. McGrath, A. Morahan, G. Murray, J. Weller, J. Jian, J. Singh, K. Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured > 98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique amongst legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes. 2016 Journal Article http://hdl.handle.net/20.500.11937/14054 10.1111/pbi.12615 https://creativecommons.org/licenses/by/4.0/ fulltext
repository_type	Digital Repository
institution_category	Local University
institution	Curtin University Malaysia
building	Curtin Institutional Repository
collection	Online Access
description	Lupins are important grain legume crops that form a critical part of sustainable farming systems, reducing fertilizer use and providing disease breaks. It has a basal phylogenetic position relative to other crop and model legumes and a high speciation rate. Narrow-leafed lupin (NLL; Lupinus angustifolius L.) is gaining popularity as a health food, which is high in protein and dietary fibre but low in starch and gluten-free. We report the draft genome assembly (609 Mb) of NLL cultivar Tanjil, which has captured > 98% of the gene content, sequences of additional lines and a dense genetic map. Lupins are unique amongst legumes and differ from most other land plants in that they do not form mycorrhizal associations. Remarkably, we find that NLL has lost all mycorrhiza-specific genes, but has retained genes commonly required for mycorrhization and nodulation. In addition, the genome also provided candidate genes for key disease resistance and domestication traits. We also find evidence of a whole genome triplication at around 25 million years ago in the genistoid lineage leading to Lupinus. Our results will support detailed studies of legume evolution and accelerate lupin breeding programmes.
format	Journal Article
author	Hane, James Ming, Y. Kamphuis, L. Nelson, M. Garg, G. Atkins, C. Bayer, P. Bravo, A. Bringans, S. Cannon, S. Edwards, D. Foley, R. Gao, L. Harrison, M. Huang, W. Hurgobin, B. Li, S. Liu, C. McGrath, A. Morahan, G. Murray, J. Weller, J. Jian, J. Singh, K.
spellingShingle	Hane, James Ming, Y. Kamphuis, L. Nelson, M. Garg, G. Atkins, C. Bayer, P. Bravo, A. Bringans, S. Cannon, S. Edwards, D. Foley, R. Gao, L. Harrison, M. Huang, W. Hurgobin, B. Li, S. Liu, C. McGrath, A. Morahan, G. Murray, J. Weller, J. Jian, J. Singh, K. A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
author_facet	Hane, James Ming, Y. Kamphuis, L. Nelson, M. Garg, G. Atkins, C. Bayer, P. Bravo, A. Bringans, S. Cannon, S. Edwards, D. Foley, R. Gao, L. Harrison, M. Huang, W. Hurgobin, B. Li, S. Liu, C. McGrath, A. Morahan, G. Murray, J. Weller, J. Jian, J. Singh, K.
author_sort	Hane, James
title	A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
title_short	A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
title_full	A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
title_fullStr	A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
title_full_unstemmed	A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution
title_sort	comprehensive draft genome sequence for lupin (lupinus angustifolius), an emerging health food: insights into plant-microbe interactions and legume evolution
publishDate	2016
url	http://hdl.handle.net/20.500.11937/14054
first_indexed	2018-09-06T19:14:51Z
last_indexed	2018-09-06T19:14:51Z
_version_	1610886720015826944

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: Insights into plant-microbe interactions and legume evolution

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