Rate variation in parasitic plants: correlated and uncorrelated patterns among plastid genes of different function

by Young, Nelson D, dePamphilis, Claude W
Published 2005

Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae)

by McNeal, Joel R, Arumugunathan, Kathiravetpilla, Kuehl, Jennifer V, Boore, Jeffrey L, dePamphilis, Claude W
Published 2007

Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta

by McNeal, Joel R, Kuehl, Jennifer V, Boore, Jeffrey L, de Pamphilis, Claude W
Published 2007

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

by Wicke, Susann, Schneeweiss, Gerald M., dePamphilis, Claude W., Müller, Kai F., Quandt, Dietmar
Published 2011

Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls

by McCarthy, Thomas W, Der, Joshua P, Honaas, Loren A, dePamphilis, Claude W, Anderson, Charles T
Published 2014

PlantTribes: a gene and gene family resource for comparative genomics in plants

by Wall, P. Kerr, Leebens-Mack, Jim, Müller, Kai F., Field, Dawn, Altman, Naomi S., dePamphilis, Claude W.
Published 2008

Chasing the hare - Evaluating the phylogenetic utility of a nuclear single copy gene region at and below species level within the species rich group Peperomia (Piperaceae)

by Naumann, Julia, Symmank, Lars, Samain, Marie-Stéphanie, Müller, Kai F, Neinhuis, Christoph, dePamphilis, Claude W, Wanke, Stefan
Published 2011

Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries

by Wang, Ji-Ping Z, Lindsay, Bruce G, Cui, Liying, Wall, P Kerr, Marion, Josh, Zhang, Jiaxuan, dePamphilis, Claude W
Published 2005

Adaptive evolution of chloroplast genome structure inferred using a parametric bootstrap approach

by Cui, Liying, Leebens-Mack, Jim, Wang, Li-San, Tang, Jijun, Rymarquis, Linda, Stern, David B, dePamphilis, Claude W
Published 2006

ChloroplastDB: the Chloroplast Genome Database

by Cui, Liying, Veeraraghavan, Narayanan, Richter, Alexander, Wall, Kerr, Jansen, Robert K., Leebens-Mack, Jim, Makalowska, Izabela, dePamphilis, Claude W.
Published 2006

Poplar maintains zinc homeostasis with heavy metal genes HMA4 and PCS1

by Adams, Joshua P., Adeli, Ardeshir, Hsu, Chuan-Yu, Harkess, Richard L., Page, Grier P., dePamphilis, Claude W., Schultz, Emily B., Yuceer, Cetin
Published 2011

Multiple major increases and decreases in mitochondrial substitution rates in the plant family Geraniaceae

by Parkinson, Christopher L, Mower, Jeffrey P, Qiu, Yin-Long, Shirk, Andrew J, Song, Keming, Young, Nelson D, dePamphilis, Claude W, Palmer, Jeffrey D
Published 2005

Complete plastid genome sequences of Drimys, Liriodendron, and Piper: implications for the phylogenetic relationships of magnoliids

by Cai, Zhengqiu, Penaflor, Cynthia, Kuehl, Jennifer V, Leebens-Mack, James, Carlson, John E, dePamphilis, Claude W, Boore, Jeffrey L, Jansen, Robert K
Published 2006

Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants

by Barkman, Todd J, McNeal, Joel R, Lim, Seok-Hong, Coat, Gwen, Croom, Henrietta B, Young, Nelson D, dePamphilis, Claude W
Published 2007

Single-Copy Nuclear Genes Place Haustorial Hydnoraceae within Piperales and Reveal a Cretaceous Origin of Multiple Parasitic Angiosperm Lineages

by Naumann, Julia, Salomo, Karsten, Der, Joshua P., Wafula, Eric K., Bolin, Jay F., Maass, Erika, Frenzke, Lena, Samain, Marie-Stéphanie, Neinhuis, Christoph, dePamphilis, Claude W., Wanke, Stefan
Published 2013

Comparative transcriptomics among floral organs of the basal eudicot Eschscholzia californica as reference for floral evolutionary developmental studies

by Zahn, Laura M, Ma, Xuan, Altman, Naomi S, Zhang, Qing, Wall, P Kerr, Tian, Donglan, Gibas, Cynthia J, Gharaibeh, Raad, Leebens-Mack, James H, dePamphilis, Claude W, Ma, Hong
Published 2010

Functional genomics of a generalist parasitic plant: Laser microdissection of host-parasite interface reveals host-specific patterns of parasite gene expression

by Honaas, Loren A, Wafula, Eric K, Yang, Zhenzhen, Der, Joshua P, Wickett, Norman J, Altman, Naomi S, Taylor, Christopher G, Yoder, John I, Timko, Michael P, Westwood, James H, dePamphilis, Claude W
Published 2013

Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species

by Zhang, Yeting, Fernandez-Aparicio, Monica, Wafula, Eric K, Das, Malay, Jiao, Yuannian, Wickett, Norman J, Honaas, Loren A, Ralph, Paula E, Wojciechowski, Martin F, Timko, Michael P, Yoder, John I, Westwood, James H, dePamphilis, Claude W
Published 2013

A Phylogenomic Assessment of Ancient Polyploidy and Genome Evolution across the Poales

by McKain, Michael R., Tang, Haibao, McNeal, Joel R., Ayyampalayam, Saravanaraj, Davis, Jerrold I., dePamphilis, Claude W., Givnish, Thomas J., Pires, J. Chris, Stevenson, Dennis Wm., Leebens-Mack, James H.
Published 2016

Selecting Superior De Novo Transcriptome Assemblies: Lessons Learned by Leveraging the Best Plant Genome

by Honaas, Loren A., Wafula, Eric K., Wickett, Norman J., Der, Joshua P., Zhang, Yeting, Edger, Patrick P., Altman, Naomi S., Pires, J. Chris, Leebens-Mack, James H., dePamphilis, Claude W.
Published 2016