SPA: a short peptide assembler for metagenomic data

by Yang, Youngik, Yooseph, Shibu
Published 2013

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters

by Yang, Youngik, Nephew, Kenneth, Kim, Sun
Published 2012

GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly

by Zhong, Cuncong, Yang, Youngik, Yooseph, Shibu
Published 2016

GRASP: Guided Reference-based Assembly of Short Peptides

by Zhong, Cuncong, Yang, Youngik, Yooseph, Shibu
Published 2015

Metagenome and Metatranscriptome Analyses Using Protein Family Profiles

by Zhong, Cuncong, Edlund, Anna, Yang, Youngik, McLean, Jeffrey S., Yooseph, Shibu
Published 2016

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

by Edlund, Anna, Yang, Youngik, Hall, Adam P, Guo, Lihong, Lux, Renate, He, Xuesong, Nelson, Karen E, Nealson, Kenneth H, Yooseph, Shibu, Shi, Wenyuan, McLean, Jeffrey S
Published 2013

Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism

by Edlund, Anna, Yang, Youngik, Yooseph, Shibu, Hall, Adam P, Nguyen, Don D, Dorrestein, Pieter C, Nelson, Karen E, He, Xuesong, Lux, Renate, Shi, Wenyuan, McLean, Jeffrey S
Published 2015