Applications of Different Weighting Schemes to Improve Pathway-Based Analysis

by Ha, Sook S., Kim, Inyoung, Wang, Yue, Xuan, Jianhua
Published 2011

Identifying cancer biomarkers by network-constrained support vector machines

by Chen, Li, Xuan, Jianhua, Riggins, Rebecca B, Clarke, Robert, Wang, Yue
Published 2011

Improved Diagnostics Using Polarization Imaging and Artificial Neural Networks

by Xuan, Jianhua, Klimach, Uwe, Zhao, Hongzhi, Chen, Qiushui, Zou, Yingyin, Wang, Yue
Published 2007

Identifying protein interaction subnetworks by a bagging Markov random field-based method

by Chen, Li, Xuan, Jianhua, Riggins, Rebecca B., Wang, Yue, Clarke, Robert
Published 2013

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks

by Shi, Xu, Gu, Jinghua, Chen, Xi, Shajahan, Ayesha, Hilakivi-Clarke, Leena, Clarke, Robert, Xuan, Jianhua
Published 2013

BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency

by Shi, Xu, Wang, Xiao, Shajahan, Ayesha, Hilakivi-Clarke, Leena, Clarke, Robert, Xuan, Jianhua
Published 2015

BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data

by Gu, Jinghua, Wang, Xiao, Halakivi-Clarke, Leena, Clarke, Robert, Xuan, Jianhua
Published 2014

Motif-guided sparse decomposition of gene expression data for regulatory module identification

by Gong, Ting, Xuan, Jianhua, Chen, Li, Riggins, Rebecca B, Li, Huai, Hoffman, Eric P, Clarke, Robert, Wang, Yue
Published 2011

Gene Selection for Multiclass Prediction by Weighted Fisher Criterion

by Xuan, Jianhua, Wang, Yue, Dong, Yibin, Feng, Yuanjian, Wang, Bin, Khan, Javed, Bakay, Maria, Wang, Zuyi, Pachman, Lauren, Winokur, Sara, Chen, Yi-Wen, Clarke, Robert, Hoffman, Eric
Published 2007

ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles

by Chen, Xi, Jung, Jin-Gyoung, Shajahan-Haq, Ayesha N., Clarke, Robert, Shih, Ie-Ming, Wang, Yue, Magnani, Luca, Wang, Tian-Li, Xuan, Jianhua
Published 2016

Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks

by Tian, Ye, Zhang, Bai, Hoffman, Eric P, Clarke, Robert, Zhang, Zhen, Shih, Ie-Ming, Xuan, Jianhua, Herrington, David M, Wang, Yue
Published 2014

Asynchronous remodeling is a driver of failed regeneration in Duchenne muscular dystrophy

by Dadgar, Sherry, Wang, Zuyi, Johnston, Helen, Kesari, Akanchha, Nagaraju, Kanneboyina, Chen, Yi-Wen, Hill, D. Ashley, Partridge, Terence A., Giri, Mamta, Freishtat, Robert J., Nazarian, Javad, Xuan, Jianhua, Wang, Yue, Hoffman, Eric P.
Published 2014