Crass: identification and reconstruction of CRISPR from unassembled metagenomic data

by Skennerton, Connor T., Imelfort, Michael, Tyson, Gene W.
Published 2013

The Bio-Community Perl toolkit for microbial ecology

by Angly, Florent E., Fields, Christopher J., Tyson, Gene W.
Published 2014

OrfM: a fast open reading frame predictor for metagenomic data

by Woodcroft, Ben J., Boyd, Joel A., Tyson, Gene W.
Published 2016

Temperature and solids retention time control microbial population dynamics and volatile fatty acid production in replicated anaerobic digesters

by Vanwonterghem, Inka, Jensen, Paul D., Rabaey, Korneel, Tyson, Gene W.
Published 2015

Strainer: software for analysis of population variation in community genomic datasets

by Eppley, John M, Tyson, Gene W, Getz, Wayne M, Banfield, Jillian F
Published 2007

Grinder: a versatile amplicon and shotgun sequence simulator

by Angly, Florent E., Willner, Dana, Rohwer, Forest, Hugenholtz, Philip, Tyson, Gene W.
Published 2012

Shining a Light on Dark Sequencing: Characterising Errors in Ion Torrent PGM Data

by Bragg, Lauren M., Stone, Glenn, Butler, Margaret K., Hugenholtz, Philip, Tyson, Gene W.
Published 2013

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction

by Angly, Florent E, Dennis, Paul G, Skarshewski, Adam, Vanwonterghem, Inka, Hugenholtz, Philip, Tyson, Gene W
Published 2014

Anode potential influences the structure and function of anodic electrode and electrolyte-associated microbiomes

by Dennis, Paul G., Virdis, Bernardino, Vanwonterghem, Inka, Hassan, Alif, Hugenholtz, Phil, Tyson, Gene W., Rabaey, Korneel
Published 2016

Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well

by Robbins, Steven J., Evans, Paul N., Parks, Donovan H., Golding, Suzanne D., Tyson, Gene W.
Published 2016

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

by Abdul Rahman, Nurdyana, Parks, Donovan H., Vanwonterghem, Inka, Morrison, Mark, Tyson, Gene W., Hugenholtz, Philip
Published 2016

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus

by Soo, Rochelle M., Woodcroft, Ben J., Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip
Published 2015

GroopM: an automated tool for the recovery of population genomes from related metagenomes

by Imelfort, Michael, Parks, Donovan, Woodcroft, Ben J., Dennis, Paul, Hugenholtz, Philip, Tyson, Gene W.
Published 2014

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking

by Sekiguchi, Yuji, Ohashi, Akiko, Parks, Donovan H., Yamauchi, Toshihiro, Tyson, Gene W., Hugenholtz, Philip
Published 2015

Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System

by Skennerton, Connor T., Angly, Florent E., Breitbart, Mya, Bragg, Lauren, He, Shaomei, McMahon, Katherine D., Hugenholtz, Philip, Tyson, Gene W.
Published 2011

Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities

by Carvalhais, Lilia C., Dennis, Paul G., Badri, Dayakar V., Tyson, Gene W., Vivanco, Jorge M., Schenk, Peer M.
Published 2013

Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events

by Angly, Florent E., Heath, Candice, Morgan, Thomas C., Tonin, Hemerson, Rich, Virginia, Schaffelke, Britta, Bourne, David G., Tyson, Gene W.
Published 2016

A laboratory investigation of interactions between denitrifying anaerobic methane oxidation (DAMO) and anammox processes in anoxic environments

by Hu, Shihu, Zeng, Raymond J., Haroon, Mohamed F., Keller, Jurg, Lant, Paul A., Tyson, Gene W., Yuan, Zhiguo
Published 2015

An Expanded Genomic Representation of the Phylum Cyanobacteria

by Soo, Rochelle M., Skennerton, Connor T., Sekiguchi, Yuji, Imelfort, Michael, Paech, Samuel J., Dennis, Paul G., Steen, Jason A., Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip
Published 2014

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

by Rinke, Christian, Low, Serene, Woodcroft, Ben J., Raina, Jean-Baptiste, Skarshewski, Adam, Le, Xuyen H., Butler, Margaret K., Stocker, Roman, Seymour, Justin, Tyson, Gene W., Hugenholtz, Philip
Published 2016