Conservation, Compensation, and Evolution of N-Linked Glycans in the HIV-1 Group M Subtypes and Circulating Recombinant Forms

by Travers, Simon A.
Published 2012

RAMICS: trainable, high-speed and biologically relevant alignment of high-throughput sequencing reads to coding DNA

by Wright, Imogen A., Travers, Simon A.
Published 2014

Appraising the performance of genotyping tools in the prediction of coreceptor tropism in HIV-1 subtype C viruses

by Crous, Saleema, Shrestha, Ram Krishna, Travers, Simon A
Published 2012

Reverse transcriptase drug resistance mutations in HIV-1 subtype C infected patients on ART in Karonga District, Malawi

by Bansode, Vijay B, Travers, Simon AA, Crampin, Amelia C, Ngwira, Bagrey, French, Neil, Glynn, Judith R, McCormack, Grace P
Published 2011

The Influence of N-Linked Glycans on the Molecular Dynamics of the HIV-1 gp120 V3 Loop

by Wood, Natasha T., Fadda, Elisa, Davis, Robert, Grant, Oliver C., Martin, Joanne C., Woods, Robert J., Travers, Simon A.
Published 2013

QTrim: a novel tool for the quality trimming of sequence reads generated using the Roche/454 sequencing platform

by Shrestha, Ram Krishna, Lubinsky, Baruch, Bansode, Vijay B, Moinz, Mónica BJ, McCormack, Grace P, Travers, Simon A
Published 2014

Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data

by Redmond, Niamh E., Raleigh, Jean, van Soest, Rob W. M., Kelly, Michelle, Travers, Simon A. A., Bradshaw, Brian, Vartia, Salla, Stephens, Kelly M., McCormack, Grace P.
Published 2011

Characterizing the emergence and persistence of drug resistant mutations in HIV-1 subtype C infections using 454 ultra deep pyrosequencing

by Bansode, Vijay, McCormack, Grace P, Crampin, Amelia C, Ngwira, Bagrey, Shrestha, Ram K, French, Neil, Glynn, Judith R, Travers, Simon A
Published 2013

Trends in Genotypic HIV-1 Antiretroviral Resistance between 2006 and 2012 in South African Patients Receiving First- and Second-Line Antiretroviral Treatment Regimens

by Van Zyl, Gert U., Liu, Tommy F., Claassen, Mathilda, Engelbrecht, Susan, de Oliveira, Tulio, Preiser, Wolfgang, Wood, Natasha T., Travers, Simon, Shafer, Robert W.
Published 2013

Characterizing the Diverse Mutational Pathways Associated with R5-Tropic Maraviroc Resistance: HIV-1 That Uses the Drug-Bound CCR5 Coreceptor

by Jiang, Xiaowei, Feyertag, Felix, Meehan, Conor J., McCormack, Grace P., Travers, Simon A., Craig, Charles, Westby, Mike, Lewis, Marilyn, Robertson, David L.
Published 2015