HMM-ModE – Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequenc...

by Srivastava, Prashant K, Desai, Dhwani K, Nandi, Soumyadeep, Lynn, Andrew M
Published 2007

ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities

by Desai, Dhwani K., Nandi, Soumyadeep, Srivastava, Prashant K., Lynn, Andrew M.
Published 2011

JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis

by Srivastava, Prashant K, Hull, Richard P, Behmoaras, Jacques, Petretto, Enrico, Aitman, Timothy J
Published 2013

A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction

by Srivastava, Prashant K, Moturu, Taraka Ramji, Pandey, Priyanka, Baldwin, Ian T, Pandey, Shree P
Published 2014

Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages

by Hull, Richard P, Srivastava, Prashant K, D’Souza, Zelpha, Atanur, Santosh S, Mechta-Grigoriou, Fatima, Game, Laurence, Petretto, Enrico, Cook, H Terence, Aitman, Timothy J, Behmoaras, Jacques
Published 2013

Integrating Phosphoproteome and Transcriptome Reveals New Determinants of Macrophage Multinucleation*

by Rotival, Maxime, Ko, Jeong-Hun, Srivastava, Prashant K., Kerloc'h, Audrey, Montoya, Alex, Mauro, Claudio, Faull, Peter, Cutillas, Pedro R., Petretto, Enrico, Behmoaras, Jacques
Published 2015

Genetic Analysis of the Cardiac Methylome at Single Nucleotide Resolution in a Model of Human Cardiovascular Disease

by Johnson, Michelle D., Mueller, Michael, Adamowicz-Brice, Martyna, Collins, Melissa J., Gellert, Pascal, Maratou, Klio, Srivastava, Prashant K., Rotival, Maxime, Butt, Shahena, Game, Laurence, Atanur, Santosh S., Silver, Nicholas, Norsworthy, Penny J., Langley, Sarah R., Petretto, Enrico, Pravenec, Michal, Aitman, Timothy J.
Published 2014

Kcnn4 Is a Regulator of Macrophage Multinucleation in Bone Homeostasis and Inflammatory Disease

by Kang, Heeseog, Kerloc’h, Audrey, Rotival, Maxime, Xu, Xiaoqing, Zhang, Qing, D’Souza, Zelpha, Kim, Michael, Scholz, Jodi Carlson, Ko, Jeong-Hun, Srivastava, Prashant K., Genzen, Jonathan R., Cui, Weiguo, Aitman, Timothy J., Game, Laurence, Melvin, James E., Hanidu, Adedayo, Dimock, Janice, Zheng, Jie, Souza, Donald, Behera, Aruna K., Nabozny, Gerald, Cook, H. Terence, Bassett, J.H. Duncan, Williams, Graham R., Li, Jun, Vignery, Agnès, Petretto, Enrico, Behmoaras, Jacques
Published 2014