On single and multiple models of protein families for the detection of remote sequence relationships

by Casbon, James A, Saqi, Mansoor AS
Published 2006

S4: structure-based sequence alignments of SCOP superfamilies

by Casbon, James, Saqi, Mansoor A. S.
Published 2005

Analysis of superfamily specific profile-profile recognition accuracy

by Casbon, James A, Saqi, Mansoor AS
Published 2004

A high level interface to SCOP and ASTRAL implemented in Python

by Casbon, James A, Crooks, Gavin E, Saqi, Mansoor AS
Published 2006

Spectral clustering of protein sequences

by Paccanaro, Alberto, Casbon, James A., Saqi, Mansoor A. S.
Published 2006

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes

by Dobson, Richard J, Munroe, Patricia B, Caulfield, Mark J, Saqi, Mansoor AS
Published 2006

STON: exploring biological pathways using the SBGN standard and graph databases

by Touré, Vasundra, Mazein, Alexander, Waltemath, Dagmar, Balaur, Irina, Saqi, Mansoor, Henkel, Ron, Pellet, Johann, Auffray, Charles
Published 2016

Discovering Study-Specific Gene Regulatory Networks

by Bo, Valeria, Curtis, Tanya, Lysenko, Artem, Saqi, Mansoor, Swift, Stephen, Tucker, Allan
Published 2014

Representing and querying disease networks using graph databases

by Lysenko, Artem, Roznovăţ, Irina A., Saqi, Mansoor, Mazein, Alexander, Rawlings, Christopher J, Auffray, Charles
Published 2016

AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations

by Defoin-Platel, Michael, Hindle, Matthew M, Lysenko, Artem, Powers, Stephen J, Habash, Dimah Z, Rawlings, Christopher J, Saqi, Mansoor
Published 2011

Clustering of Pseudomonas aeruginosa transcriptomes from planktonic cultures, developing and mature biofilms reveals distinct expression profiles

by Waite, Richard D, Paccanaro, Alberto, Papakonstantinopoulou, Anastasia, Hurst, Jacob M, Saqi, Mansoor, Littler, Eddie, Curtis, Michael A
Published 2006

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis

by Lysenko, Artem, Defoin-Platel, Michael, Hassani-Pak, Keywan, Taubert, Jan, Hodgman, Charlie, Rawlings, Christopher J, Saqi, Mansoor
Published 2011

Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum

by Lysenko, Artem, Urban, Martin, Bennett, Laura, Tsoka, Sophia, Janowska-Sejda, Elzbieta, Rawlings, Chris J., Hammond-Kosack, Kim E., Saqi, Mansoor
Published 2013

Systems Responses to Progressive Water Stress in Durum Wheat

by Habash, Dimah Z., Baudo, Marcela, Hindle, Matthew, Powers, Stephen J., Defoin-Platel, Michael, Mitchell, Rowan, Saqi, Mansoor, Rawlings, Chris, Latiri, Kawther, Araus, Jose L., Abdulkader, Ahmad, Tuberosa, Roberto, Lawlor, David W., Nachit, Miloudi M.
Published 2014