Analyzing alternative splicing data of splice junction arrays from Parkinson patients' leukocytes before and after deep brain stimulation as compared with control donors

by Soreq, Lilach, Salomonis, Nathan, Israel, Zvi, Bergman, Hagai, Soreq, Hermona
Published 2015

MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data

by Doniger, Scott W, Salomonis, Nathan, Dahlquist, Kam D, Vranizan, Karen, Lawlor, Steven C, Conklin, Bruce R
Published 2003

Mosaic: making biological sense of complex networks

by Zhang, Chao, Hanspers, Kristina, Kuchinsky, Allan, Salomonis, Nathan, Xu, Dong, Pico, Alexander R.
Published 2012

Small RNA sequencing-microarray analyses in Parkinson leukocytes reveal deep brain stimulation-induced splicing changes that classify brain region transcriptomes

by Soreq, Lilach, Salomonis, Nathan, Bronstein, Michal, Greenberg, David S., Israel, Zvi, Bergman, Hagai, Soreq, Hermona
Published 2013

Long Non-Coding RNA and Alternative Splicing Modulations in Parkinson's Leukocytes Identified by RNA Sequencing

by Soreq, Lilach, Guffanti, Alessandro, Salomonis, Nathan, Simchovitz, Alon, Israel, Zvi, Bergman, Hagai, Soreq, Hermona
Published 2014

Whole transcriptome RNA sequencing data from blood leukocytes derived from Parkinson's disease patients prior to and following deep brain stimulation treatment

by Soreq, Lilach, Salomonis, Nathan, Guffanti, Alessandro, Bergman, Hagai, Israel, Zvi, Soreq, Hermona
Published 2014

Identifying genetic networks underlying myometrial transition to labor

by Salomonis, Nathan, Cotte, Nathalie, Zambon, Alexander C, Pollard, Katherine S, Vranizan, Karen, Doniger, Scott W, Dolganov, Gregory, Conklin, Bruce R
Published 2005

Single-cell analysis of mixed-lineage states leading to a binary cell fate choice

by Olsson, Andre, Venkatasubramanian, Meenakshi, Chaudhri, Viren K., Aronow, Bruce J., Salomonis, Nathan, Singh, Harinder, Grimes, H. Leighton
Published 2016

MBNL1-mediated regulation of differentiation RNAs promotes myofibroblast transformation and the fibrotic response

by Davis, Jennifer, Salomonis, Nathan, Ghearing, Natasha, Lin, Suh-Chin J., Kwong, Jennifer Q., Mohan, Apoorva, Swanson, Maurice S., Molkentin, Jeffery D.
Published 2015

GenMAPP 2: new features and resources for pathway analysis

by Salomonis, Nathan, Hanspers, Kristina, Zambon, Alexander C, Vranizan, Karen, Lawlor, Steven C, Dahlquist, Kam D, Doniger, Scott W, Stuart, Josh, Conklin, Bruce R, Pico, Alexander R
Published 2007

Deficiency of the lipid synthesis enzyme, DGAT1, extends longevity in mice

by Streeper, Ryan S., Grueter, Carrie A., Salomonis, Nathan, Cases, Sylvaine, Levin, Malin C., Koliwad, Suneil K., Zhou, Ping, Hirschey, Matthew D., Verdin, Eric, Farese, Robert V.
Published 2012

Time- and exercise-dependent gene regulation in human skeletal muscle

by Zambon, Alexander C, McDearmon, Erin L, Salomonis, Nathan, Vranizan, Karen M, Johansen, Kirsten L, Adey, Deborah, Takahashi, Joseph S, Schambelan, Morris, Conklin, Bruce R
Published 2003

GO-Elite: a flexible solution for pathway and ontology over-representation

by Zambon, Alexander C., Gaj, Stan, Ho, Isaac, Hanspers, Kristina, Vranizan, Karen, Evelo, Chris T., Conklin, Bruce R., Pico, Alexander R., Salomonis, Nathan
Published 2012

AKAP13 Rho-GEF and PKD-Binding Domain Deficient Mice Develop Normally but Have an Abnormal Response to β-Adrenergic-Induced Cardiac Hypertrophy

by Spindler, Matthew J., Burmeister, Brian T., Huang, Yu, Hsiao, Edward C., Salomonis, Nathan, Scott, Mark J., Srivastava, Deepak, Carnegie, Graeme K., Conklin, Bruce R.
Published 2013

MAAMD: a workflow to standardize meta-analyses and comparison of affymetrix microarray data

by Gan, Zhuohui, Wang, Jianwu, Salomonis, Nathan, Stowe, Jennifer C, Haddad, Gabriel G, McCulloch, Andrew D, Altintas, Ilkay, Zambon, Alexander C
Published 2014

Systems biology evaluation of cell-free amniotic fluid transcriptome of term and preterm infants to detect fetal maturity

by Kamath-Rayne, Beena D., Du, Yina, Hughes, Maria, Wagner, Erin A., Muglia, Louis J., DeFranco, Emily A., Whitsett, Jeffrey A., Salomonis, Nathan, Xu, Yan
Published 2015

The kSORT Assay to Detect Renal Transplant Patients at High Risk for Acute Rejection: Results of the Multicenter AART Study

by Roedder, Silke, Sigdel, Tara, Salomonis, Nathan, Hsieh, Sue, Dai, Hong, Bestard, Oriol, Metes, Diana, Zeevi, Andrea, Gritsch, Albin, Cheeseman, Jennifer, Macedo, Camila, Peddy, Ram, Medeiros, Mara, Vincenti, Flavio, Asher, Nancy, Salvatierra, Oscar, Shapiro, Ron, Kirk, Allan, Reed, Elaine, Sarwal, Minnie M.
Published 2014

Integrated Genomic Analysis of Diverse Induced Pluripotent Stem Cells from the Progenitor Cell Biology Consortium

by Salomonis, Nathan, Dexheimer, Phillip J., Omberg, Larsson, Schroll, Robin, Bush, Stacy, Huo, Jeffrey, Schriml, Lynn, Ho Sui, Shannan, Keddache, Mehdi, Mayhew, Christopher, Shanmukhappa, Shiva Kumar, Wells, James, Daily, Kenneth, Hubler, Shane, Wang, Yuliang, Zambidis, Elias, Margolin, Adam, Hide, Winston, Hatzopoulos, Antonis K., Malik, Punam, Cancelas, Jose A., Aronow, Bruce J., Lutzko, Carolyn
Published 2016