A segmental genomic duplication generates a functional intron

by Hellsten, Uffe, Aspden, Julie L., Rio, Donald C., Rokhsar, Daniel S.
Published 2011

Meraculous: De Novo Genome Assembly with Short Paired-End Reads

by Chapman, Jarrod A., Ho, Isaac, Sunkara, Sirisha, Luo, Shujun, Schroth, Gary P., Rokhsar, Daniel S.
Published 2011

Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis

by Hellsten, Uffe, Khokha, Mustafa K, Grammer, Timothy C, Harland, Richard M, Richardson, Paul, Rokhsar, Daniel S
Published 2007

Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing

by Glazer, Andrew M., Killingbeck, Emily E., Mitros, Therese, Rokhsar, Daniel S., Miller, Craig T.
Published 2015

Development and Initial Characterization of a HAPPY Panel for Mapping the X. Tropicalis Genome

by Jiang, Zhihua, Michal, Jennifer J., Beckman, Kenneth B., Lyons, Jessica B., Zhang, Ming, Pan, Zengxiang, Rokhsar, Daniel S., Harland, Richard M.
Published 2011

StellaBase: The Nematostella vectensis Genomics Database

by Sullivan, James C., Ryan, Joseph F., Watson, James A., Webb, Jeramy, Mullikin, James C., Rokhsar, Daniel, Finnerty, John R.
Published 2006

Development of a toolbox to dissect host-endosymbiont interactions and protein trafficking in the trypanosomatid Angomonas deanei

by Morales, Jorge, Kokkori, Sofia, Weidauer, Diana, Chapman, Jarrod, Goltsman, Eugene, Rokhsar, Daniel, Grossman, Arthur R., Nowack, Eva C. M.
Published 2016

Phytozome: a comparative platform for green plant genomics

by Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.
Published 2012

The Eucalyptus grandis Genome Project: Genome and transcriptome resources for comparative analysis of woody plant biology

by Myburg, Alexander, Grattapaglia, Dario, Tuskan, Gerald, Jenkins, Jerry, Schmutz, Jeremy, Mizrachi, Eshchar, Hefer, Charles, Pappas, Georgios, Sterck, Lieven, Van De Peer, Yves, Hayes, Richard, Rokhsar, Daniel
Published 2011

Populus resequencing: towards genome-wide association studies

by Tuskan, Gerald, Slavov, Gancho, DiFazio, Steve, Muchero, Wellington, Pryia, Ranjan, Schackwitz, Wendy, Martin, Joel, Rokhsar, Daniel, Sykes, Robert, Davis, Mark, Studer, Michael, Wyman, Charles
Published 2011

The Cassava Genome: Current Progress, Future Directions

by Prochnik, Simon, Marri, Pradeep Reddy, Desany, Brian, Rabinowicz, Pablo D., Kodira, Chinnappa, Mohiuddin, Mohammed, Rodriguez, Fausto, Fauquet, Claude, Tohme, Joseph, Harkins, Timothy, Rokhsar, Daniel S., Rounsley, Steve
Published 2012

A Genome-Wide Survey of Switchgrass Genome Structure and Organization

by Sharma, Manoj K., Sharma, Rita, Cao, Peijian, Jenkins, Jerry, Bartley, Laura E., Qualls, Morgan, Grimwood, Jane, Schmutz, Jeremy, Rokhsar, Daniel, Ronald, Pamela C.
Published 2012

The octopus genome and the evolution of cephalopod neural and morphological novelties

by Albertin, Caroline B., Simakov, Oleg, Mitros, Therese, Wang, Z. Yan, Pungor, Judit R., Edsinger-Gonzalez, Eric, Brenner, Sydney, Ragsdale, Clifton W., Rokhsar, Daniel S.
Published 2015

The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii

by Lowry, David B, Hernandez, Kyle, Taylor, Samuel H, Meyer, Eli, Logan, Tierney L, Barry, Kerrie W, Chapman, Jarrod A, Rokhsar, Daniel S, Schmutz, Jeremy, Juenger, Thomas E
Published 2015

The Genome Portal of the Department of Energy Joint Genome Institute

by Grigoriev, Igor V., Nordberg, Henrik, Shabalov, Igor, Aerts, Andrea, Cantor, Mike, Goodstein, David, Kuo, Alan, Minovitsky, Simon, Nikitin, Roman, Ohm, Robin A., Otillar, Robert, Poliakov, Alex, Ratnere, Igor, Riley, Robert, Smirnova, Tatyana, Rokhsar, Daniel, Dubchak, Inna
Published 2012

A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy

by Swaminathan, Kankshita, Chae, Won Byoung, Mitros, Therese, Varala, Kranthi, Xie, Liang, Barling, Adam, Glowacka, Katarzyna, Hall, Megan, Jezowski, Stanislaw, Ming, Ray, Hudson, Matthew, Juvik, John A, Rokhsar, Daniel S, Moose, Stephen P
Published 2012

Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies

by Jung, Sook, Cestaro, Alessandro, Troggio, Michela, Main, Dorrie, Zheng, Ping, Cho, Ilhyung, Folta, Kevin M, Sosinski, Bryon, Abbott, Albert, Celton, Jean-Marc, Arús, Pere, Shulaev, Vladimir, Verde, Ignazio, Morgante, Michele, Rokhsar, Daniel, Velasco, Riccardo, Sargent, Daniel James
Published 2012

A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomes

by Barling, Adam, Swaminathan, Kankshita, Mitros, Therese, James, Brandon T, Morris, Juliette, Ngamboma, Ornella, Hall, Megan C, Kirkpatrick, Jessica, Alabady, Magdy, Spence, Ashley K, Hudson, Matthew E, Rokhsar, Daniel S, Moose, Stephen P
Published 2013

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

by Chapman, Jarrod A, Mascher, Martin, Buluç, Aydın, Barry, Kerrie, Georganas, Evangelos, Session, Adam, Strnadova, Veronika, Jenkins, Jerry, Sehgal, Sunish, Oliker, Leonid, Schmutz, Jeremy, Yelick, Katherine A, Scholz, Uwe, Waugh, Robbie, Poland, Jesse A, Muehlbauer, Gary J, Stein, Nils, Rokhsar, Daniel S
Published 2015

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

by Mascher, Martin, Muehlbauer, Gary J, Rokhsar, Daniel S, Chapman, Jarrod, Schmutz, Jeremy, Barry, Kerrie, Muñoz-Amatriaín, María, Close, Timothy J, Wise, Roger P, Schulman, Alan H, Himmelbach, Axel, Mayer, Klaus FX, Scholz, Uwe, Poland, Jesse A, Stein, Nils, Waugh, Robbie
Published 2013