Analysis of quality raw data of second generation sequencers with Quality Assessment Software

by Ramos, Rommel TJ, Carneiro, Adriana R, Baumbach, Jan, Azevedo, Vasco, Schneider, Maria PC, Silva, Artur
Published 2011

Simplifier: a web tool to eliminate redundant NGS contigs

by Ramos, Rommel Thiago Jucá, Carneiro, Adriana Ribeiro, Azevedo, Vasco, Schneider, Maria Paula, Barh, Debmalya, Silva, Artur
Published 2012

AutoAssemblyD: a graphical user interface system for several genome assemblers

by Veras, Adonney Allan de Oliveira, de Sá, Pablo Henrique Caracciolo Gomes, Azevedo, Vasco, Silva, Artur, Ramos, Rommel Thiago Jucá
Published 2013

Graphical contig analyzer for all sequencing platforms (G4ALL): a new stand-alone tool for finishing and draft generation of bacterial genomes

by Ramos, Rommel Thiago Jucá, Carneiro, Adriana R, Caracciolo, Pablo H, Azevedo, Vasco, Schneider, Maria Paula C, Barh, Debmalya, Silva, Artur
Published 2013

MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes

by Mariano, Diego CB, Pereira, Felipe L, Ghosh, Preetam, Barh, Debmalya, Figueiredo, Henrique CP, Silva, Artur, Ramos, Rommel TJ, Azevedo, Vasco AC
Published 2015

Draft Genome Sequence of the Picocyanobacterium Synechococcus sp. Strain GFB01, Isolated from a Freshwater Lagoon in the Brazilian Amazon

by Guimarães, Pedro Ivo, Leão, Tiago Ferreira, de Melo, Aline Grasielle Costa, Ramos, Rommel Thiago Jucá, Silva, Artur, Fiore, Marli Fatima, Schneider, Maria Paula Cruz
Published 2015

Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data

by Kawasaki, Regiane, Baraúna, Rafael A., Silva, Artur, Carepo, Marta S. P., Oliveira, Rui, Marques, Rodolfo, Ramos, Rommel T. J., Schneider, Maria P. C.
Published 2016

Draft Genome Sequence of the N2-Fixing Cyanobacterium Nostoc piscinale CENA21, Isolated from the Brazilian Amazon Floodplain

by Leão, Tiago, Guimarães, Pedro Ivo, de Melo, Aline Grasielle Costa, Ramos, Rommel Thiago Jucá, Leão, Pedro Nuno, Silva, Artur, Fiore, Marli Fatima, Schneider, Maria Paula Cruz
Published 2016

GapBlaster—A Graphical Gap Filler for Prokaryote Genomes

by de Sá, Pablo H. C. G., Miranda, Fábio, Veras, Adonney, de Melo, Diego Magalhães, Soares, Siomar, Pinheiro, Kenny, Guimarães, Luis, Azevedo, Vasco, Silva, Artur, Ramos, Rommel T. J.
Published 2016

Inside the Pan-genome - Methods and Software Overview

by Guimarães, Luis Carlos, Florczak-Wyspianska, Jolanta, de Jesus, Leandro Benevides, Viana, Marcus Vinícius Canário, Silva, Artur, Ramos, Rommel Thiago Jucá, Soares, Siomar de Castro, Soares, Siomar de Castro
Published 2015

Genome informatics and vaccine targets in Corynebacterium urealyticum using two whole genomes, comparative genomics, and reverse vaccinology

by Guimarães, Luis Carlos, Soares, Siomar de Castro, Trost, Eva, Blom, Jochen, Ramos, Rommel Thiago Jucá, Silva, Artur, Barh, Debmalya, Azevedo, Vasco
Published 2015

DISMIRA: Prioritization of disease candidates in miRNA-disease associations based on maximum weighted matching inference model and motif-based analysis

by Nalluri, Joseph J, Kamapantula, Bhanu K, Barh, Debmalya, Jain, Neha, Bhattacharya, Antaripa, de Almeida, Sintia Silva, Juca Ramos, Rommel Thiago, Silva, Artur, Azevedo, Vasco, Ghosh, Preetam
Published 2015

Draft Genome Sequence of Haloferax sp. Strain ATB1, Isolated from a Semi-Arid Region in the Brazilian Caatinga

by Castro, Wendel de Oliveira, Torres-Ballesteros, Adriana Maria, Nakayama, Cristina Rossi, Melo, Itamar Soares, Pellizari, Vivian Helena, Silva, Artur, Ramos, Rommel Thiago Jucá
Published 2014

PIPS: Pathogenicity Island Prediction Software

by Soares, Siomar C., Abreu, Vinícius A. C., Ramos, Rommel T. J., Cerdeira, Louise, Silva, Artur, Baumbach, Jan, Trost, Eva, Tauch, Andreas, Hirata, Raphael, Mattos-Guaraldi, Ana L., Miyoshi, Anderson, Azevedo, Vasco
Published 2012

FunSys: Software for functional analysis of prokaryotic transcriptome and proteome

by de Sá, Pablo, Pinto, Anne, Ramos, Rommel Thiago Jucá, Coimbra, Nilson, Baraúna, Rafael, Dall'Agnol, Hivana, Carneiro, Adriana, Ranieri, Alex, Valadares, Agenor, Azevedo, Vasco, Schneider, Maria Paula, Barh, Debmalya, Silva, Artur
Published 2012

Complete Genome of a Methanosarcina mazei Strain Isolated from Sediment Samples from an Amazonian Flooded Area

by Assis das Graças, Diego, Thiago Jucá Ramos, Rommel, Vieira Araújo, Ana Carolina, Zahlouth, Ramiro, Ribeiro Carneiro, Adriana, Souza Lopes, Thiago, Azevedo Baraúna, Rafael, Azevedo, Vasco, Cruz Schneider, Maria Paula, Pellizari, Vivian Helena, Silva, Artur
Published 2013

The Detection and Sequencing of a Broad-Host-Range Conjugative IncP-1β Plasmid in an Epidemic Strain of Mycobacterium abscessus subsp. bolletii

by Leão, Sylvia Cardoso, Matsumoto, Cristianne Kayoko, Carneiro, Adriana, Ramos, Rommel Thiago, Nogueira, Christiane Lourenço, Junior, James Daltro Lima, Lima, Karla Valéria, Lopes, Maria Luiza, Schneider, Horacio, Azevedo, Vasco Ariston, da Costa da Silva, Artur
Published 2013

Draft Genome Sequence of Methylobacterium mesophilicum Strain SR1.6/6, Isolated from Citrus sinensis

by Marinho Almeida, Diogo, Dini-Andreote, Francisco, Camargo Neves, Aline Aparecida, Jucá Ramos, Rommel Thiago, Andreote, Fernando Dini, Carneiro, Adriana Ribeiro, Oliveira de Souza Lima, André, Caracciolo Gomes de Sá, Pablo Henrique, Ribeiro Barbosa, Maria Silvanira, Araújo, Welington Luiz, Silva, Artur
Published 2013

Draft Genome Sequence of the Brazilian Toxic Bloom-Forming Cyanobacterium Microcystis aeruginosa Strain SPC777

by Fiore, Marli F., Alvarenga, Danillo O., Varani, Alessandro M., Hoff-Risseti, Caroline, Crespim, Elaine, Ramos, Rommel T. J., Silva, Artur, Schaker, Patricia D. C., Heck, Karina, Rigonato, Janaina, Schneider, Maria Paula C.
Published 2013

Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater

by Carneiro, Adriana Ribeiro, Jucá Ramos, Rommel Thiago, Baraúna, Rafael Azevedo, de Sá, Pablo Henrique, Marinho Almeida, Diogo, Barbosa, Silvanira, Pereira, Anabela, Alves, Artur, Egas, Conceição, Correia, António, Henriques, Isabel, Silva, Artur
Published 2013