NetWalker: a contextual network analysis tool for functional genomics

by Komurov, Kakajan, Dursun, Serkan, Erdin, Serkan, Ram, Prahlad T
Published 2012

Mapping Network Motif Tunability and Robustness in the Design of Synthetic Signaling Circuits

by Iadevaia, Sergio, Nakhleh, Luay K., Azencott, Robert, Ram, Prahlad T.
Published 2014

Robust Selection Algorithm (RSA) for Multi-Omic Biomarker Discovery; Integration with Functional Network Analysis to Identify miRNA Regulated Pathways in Multiple Cancers

by Sehgal, Vasudha, Seviour, Elena G., Moss, Tyler J., Mills, Gordon B., Azencott, Robert, Ram, Prahlad T.
Published 2015

The glucose-deprivation network counteracts lapatinib-induced toxicity in resistant ErbB2-positive breast cancer cells

by Komurov, Kakajan, Tseng, Jen-Te, Muller, Melissa, Seviour, Elena G, Moss, Tyler J, Yang, Lifeng, Nagrath, Deepak, Ram, Prahlad T
Published 2012

Kinome siRNA-phosphoproteomic screen identifies networks regulating AKT signaling

by Lu, Yiling, Muller, Melissa, Smith, Debra, Dutta, Bhaskar, Komurov, Kakajan, Iadevaia, Sergio, Ruths, Derek, Tseng, Jen-Te, Yu, Shuangxing, Yu, Qinghua, Nakhleh, Luay, Balazsi, Gabor, Donnelly, Jennifer, Schurdak, Mark, Morgan-Lappe, Susan, Fesik, Stephen, Ram, Prahlad T., Mills, Gordon B.
Published 2011

Integrated analysis reveals microRNA networks coordinately expressed with key proteins in breast cancer

by Aure, Miriam Ragle, Jernström, Sandra, Krohn, Marit, Vollan, Hans Kristian Moen, Due, Eldri U, Rødland, Einar, Kåresen, Rolf, Ram, Prahlad, Lu, Yiling, Mills, Gordon B, Sahlberg, Kristine Kleivi, Børresen-Dale, Anne-Lise, Lingjærde, Ole Christian, Kristensen, Vessela N
Published 2015

Tumor microenvironment derived exosomes pleiotropically modulate cancer cell metabolism

by Zhao, Hongyun, Yang, Lifeng, Baddour, Joelle, Achreja, Abhinav, Bernard, Vincent, Moss, Tyler, Marini, Juan C, Tudawe, Thavisha, Seviour, Elena G, San Lucas, F Anthony, Alvarez, Hector, Gupta, Sonal, Maiti, Sourindra N, Cooper, Laurence, Peehl, Donna, Ram, Prahlad T, Maitra, Anirban, Nagrath, Deepak
Published 2016

Metabolic shifts toward glutamine regulate tumor growth, invasion and bioenergetics in ovarian cancer

by Yang, Lifeng, Moss, Tyler, Mangala, Lingegowda S, Marini, Juan, Zhao, Hongyun, Wahlig, Stephen, Armaiz‐Pena, Guillermo, Jiang, Dahai, Achreja, Abhinav, Win, Julia, Roopaimoole, Rajesha, Rodriguez‐Aguayo, Cristian, Mercado‐Uribe, Imelda, Lopez‐Berestein, Gabriel, Liu, Jinsong, Tsukamoto, Takashi, Sood, Anil K., Ram, Prahlad T, Nagrath, Deepak
Published 2014

A pan-cancer proteomic perspective on The Cancer Genome Atlas

by Akbani, Rehan, Ng, Patrick Kwok Shing, Werner, Henrica M.J., Shahmoradgoli, Maria, Zhang, Fan, Ju, Zhenlin, Liu, Wenbin, Yang, Ji-Yeon, Yoshihara, Kosuke, Li, Jun, Ling, Shiyun, Seviour, Elena G., Ram, Prahlad T., Minna, John D., Diao, Lixia, Tong, Pan, Heymach, John V., Hill, Steven M., Dondelinger, Frank, Städler, Nicolas, Byers, Lauren A., Meric-Bernstam, Funda, Weinstein, John N., Broom, Bradley M., Verhaak, Roeland G.W., Liang, Han, Mukherjee, Sach, Lu, Yiling, Mills, Gordon B.
Published 2014

A miR-192-EGR1-HOXB9 regulatory network controls the angiogenic switch in cancer

by Wu, Sherry Y., Rupaimoole, Rajesha, Shen, Fangrong, Pradeep, Sunila, Pecot, Chad V., Ivan, Cristina, Nagaraja, Archana S., Gharpure, Kshipra M., Pham, Elizabeth, Hatakeyama, Hiroto, McGuire, Michael H., Haemmerle, Monika, Vidal-Anaya, Viviana, Olsen, Courtney, Rodriguez-Aguayo, Cristian, Filant, Justyna, Ehsanipour, Ehsan A., Herbrich, Shelley M., Maiti, Sourindra N., Huang, Li, Kim, Ji Hoon, Zhang, Xinna, Han, Hee-Dong, Armaiz-Pena, Guillermo N., Seviour, Elena G., Tucker, Sue, Zhang, Min, Yang, Da, Cooper, Laurence J. N., Ali-Fehmi, Rouba, Bar-Eli, Menashe, Lee, Ju-Seog, Ram, Prahlad T., Baggerly, Keith A., Lopez-Berestein, Gabriel, Hung, Mien-Chie, Sood, Anil K.
Published 2016