Dirichlet Multinomial Mixtures: Generative Models for Microbial Metagenomics

by Holmes, Ian, Harris, Keith, Quince, Christopher
Published 2012

VSEARCH: a versatile open source tool for metagenomics

by Rognes, Torbjørn, Flouri, Tomáš, Nichols, Ben, Quince, Christopher, Mahé, Frédéric
Published 2016

Bioaugmentation Mitigates the Impact of Estrogen on Coliform-Grazing Protozoa in Slow Sand Filters

by Haig, Sarah-Jane, Gauchotte-Lindsay, Caroline, Collins, Gavin, Quince, Christopher
Published 2016

UCHIME improves sensitivity and speed of chimera detection

by Edgar, Robert C., Haas, Brian J., Clemente, Jose C., Quince, Christopher, Knight, Rob
Published 2011

A Comparison of rpoB and 16S rRNA as Markers in Pyrosequencing Studies of Bacterial Diversity

by Vos, Michiel, Quince, Christopher, Pijl, Agata S., de Hollander, Mattias, Kowalchuk, George A.
Published 2012

Headwaters are critical reservoirs of microbial diversity for fluvial networks

by Besemer, Katharina, Singer, Gabriel, Quince, Christopher, Bertuzzo, Enrico, Sloan, William, Battin, Tom J.
Published 2013

Swarm v2: highly-scalable and high-resolution amplicon clustering

by Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah
Published 2015

Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota

by Oton, Eduard Vico, Quince, Christopher, Nicol, Graeme W, Prosser, James I, Gubry-Rangin, Cécile
Published 2016

The Relationship between Microbial Community Evenness and Function in Slow Sand Filters

by Haig, Sarah-Jane, Quince, Christopher, Davies, Robert L., Dorea, Caetano C., Collins, Gavin
Published 2015

PhyloPythiaS+: a self-training method for the rapid reconstruction of low-ranking taxonomic bins from metagenomes

by Gregor, Ivan, Dröge, Johannes, Schirmer, Melanie, Quince, Christopher, McHardy, Alice C.
Published 2016

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

by Schirmer, Melanie, D’Amore, Rosalinda, Ijaz, Umer Z., Hall, Neil, Quince, Christopher
Published 2016

Swarm: robust and fast clustering method for amplicon-based studies

by Mahé, Frédéric, Rognes, Torbjørn, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah
Published 2014

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

by Schirmer, Melanie, Ijaz, Umer Z., D'Amore, Rosalinda, Hall, Neil, Sloan, William T., Quince, Christopher
Published 2015

Dynamics of Envelope Evolution in Clade C SHIV-Infected Pig-Tailed Macaques during Disease Progression Analyzed by Ultra-Deep Pyrosequencing

by Tso, For Yue, Tully, Damien C., Gonzalez, Sandra, Quince, Christopher, Ho, On, Polacino, Patricia, Ruprecht, Ruth M., Hu, Shiu-Lok, Wood, Charles
Published 2012

Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering

by Chroňáková, Alica, Schloter-Hai, Brigitte, Radl, Viviane, Endesfelder, David, Quince, Christopher, Elhottová, Dana, Šimek, Miloslav, Schloter, Michael
Published 2015

Correction: Response of Archaeal and Bacterial Soil Communities to Changes Associated with Outdoor Cattle Overwintering

by Chroňáková, Alica, Schloter-Hai, Brigitte, Radl, Viviane, Endesfelder, David, Quince, Christopher, Elhottová, Dana, Šimek, Miloslav, Schloter, Michael
Published 2015

Anvi’o: an advanced analysis and visualization platform for ‘omics data

by Eren, A. Murat, Esen, Özcan C., Quince, Christopher, Vineis, Joseph H., Morrison, Hilary G., Sogin, Mitchell L., Delmont, Tom O.
Published 2015

The effect of DNA extraction methodology on gut microbiota research applications

by Gerasimidis, Konstantinos, Bertz, Martin, Quince, Christopher, Brunner, Katja, Bruce, Alanna, Combet, Emilie, Calus, Szymon, Loman, Nick, Ijaz, Umer Zeeshan
Published 2016

Diversity and dynamics of rare and of resident bacterial populations in coastal sands

by Gobet, Angélique, Böer, Simone I, Huse, Susan M, van Beusekom, Justus E E, Quince, Christopher, Sogin, Mitchell L, Boetius, Antje, Ramette, Alban
Published 2012

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

by D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher, Hall, Neil
Published 2016