ROVER variant caller: read-pair overlap considerate variant-calling software applied to PCR-based massively parallel sequencing datasets

by Pope, Bernard J, Nguyen-Dumont, Tú, Hammet, Fleur, Park, Daniel J
Published 2014

Single nucleotide-level mapping of DNA double-strand breaks in human HEK293T cells

by Pope, Bernard J., Mahmood, Khalid, Jung, Chol-hee, Georgeson, Peter, Park, Daniel J.
Published 2016

Fine resolution mapping of double-strand break sites for human ribosomal DNA units

by Pope, Bernard J., Mahmood, Khalid, Jung, Chol-hee, Park, Daniel J.
Published 2016

Annokey: an annotation tool based on key term search of the NCBI Entrez Gene database

by Park, Daniel J, Nguyen-Dumont, Tú, Kang, Sori, Verspoor, Karin, Pope, Bernard J
Published 2014

UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing

by Park, Daniel J., Li, Roger, Lau, Edmund, Georgeson, Peter, Nguyen-Dumont, Tú, Pope, Bernard J.
Published 2016

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

by Inouye, Michael, Dashnow, Harriet, Raven, Lesley-Ann, Schultz, Mark B, Pope, Bernard J, Tomita, Takehiro, Zobel, Justin, Holt, Kathryn E
Published 2014

FAVR (Filtering and Annotation of Variants that are Rare): methods to facilitate the analysis of rare germline genetic variants from massively parallel sequencing datasets

by Pope, Bernard J, Nguyen-Dumont, Tú, Odefrey, Fabrice, Hammet, Fleur, Bell, Russell, Tao, Kayoko, Tavtigian, Sean V, Goldgar, David E, Lonie, Andrew, Southey, Melissa C, Park, Daniel J
Published 2013

Hi-Plex for high-throughput mutation screening: application to the breast cancer susceptibility gene PALB2

by Nguyen-Dumont, Tú, Teo, Zhi L, Pope, Bernard J, Hammet, Fleur, Mahmoodi, Maryam, Tsimiklis, Helen, Sabbaghian, Nelly, Tischkowitz, Marc, Foulkes, William D, Giles, Graham G, Hopper, John L, Southey, Melissa C, Park, Daniel J
Published 2013

MYRF Is a Membrane-Associated Transcription Factor That Autoproteolytically Cleaves to Directly Activate Myelin Genes

by Bujalka, Helena, Koenning, Matthias, Jackson, Stacey, Perreau, Victoria M., Pope, Bernard, Hay, Curtis M., Mitew, Stanlislaw, Hill, Andrew F., Lu, Q. Richard, Wegner, Michael, Srinivasan, Rajini, Svaren, John, Willingham, Melanie, Barres, Ben A., Emery, Ben
Published 2013

Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat

by Wong, Nicholas C., Pope, Bernard J., Candiloro, Ida, Korbie, Darren, Trau, Matt, Wong, Stephen Q., Mikeska, Thomas, van Denderen, Bryce J. W., Thompson, Erik W., Eggers, Stefanie, Doyle, Stephen R., Dobrovic, Alexander
Published 2015

MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing

by Wong, Nicholas C., Pope, Bernard J., Candiloro, Ida L., Korbie, Darren, Trau, Matt, Wong, Stephen Q., Mikeska, Thomas, Zhang, Xinmin, Pitman, Mark, Eggers, Stefanie, Doyle, Stephen R., Dobrovic, Alexander
Published 2016