Loss of heterozygosity preferentially occurs in early replicating regions in cancer genomes

by Pedersen, Brent S., De, Subhajyoti
Published 2013

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

by Dale, Ryan K., Pedersen, Brent S., Quinlan, Aaron R.
Published 2011

Dose–Sensitivity, Conserved Non-Coding Sequences, and Duplicate Gene Retention Through Multiple Tetraploidies in the Grasses

by Schnable, James C., Pedersen, Brent S., Subramaniam, Sabarinath, Freeling, Michael
Published 2011

Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses

by Turco, Gina, Schnable, James C., Pedersen, Brent, Freeling, Michael
Published 2013

Vcfanno: fast, flexible annotation of genetic variants

by Pedersen, Brent S., Layer, Ryan M., Quinlan, Aaron R.
Published 2016

Screening synteny blocks in pairwise genome comparisons through integer programming

by Tang, Haibao, Lyons, Eric, Pedersen, Brent, Schnable, James C, Paterson, Andrew H, Freeling, Michael
Published 2011

In Utero Cigarette Smoke Affects Allergic Airway Disease But Does Not Alter the Lung Methylome

by Eyring, Kenneth R., Pedersen, Brent S., Yang, Ivana V., Schwartz, David A.
Published 2015

Signatures of accelerated somatic evolution in gene promoters in multiple cancer types

by Smith, Kyle S., Yadav, Vinod K., Pedersen, Brent S., Shaknovich, Rita, Geraci, Mark W., Pollard, Katherine S., De, Subhajyoti
Published 2015

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

by Parnell, Laurence D., Lindenbaum, Pierre, Shameer, Khader, Dall'Olio, Giovanni Marco, Swan, Daniel C., Jensen, Lars Juhl, Cockell, Simon J., Pedersen, Brent S., Mangan, Mary E., Miller, Christopher A., Albert, Istvan
Published 2011

Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis

by Fingerlin, Tasha E., Murphy, Elissa, Zhang, Weiming, Peljto, Anna L., Brown, Kevin K., Steele, Mark P., Loyd, James E., Cosgrove, Gregory P., Lynch, David, Groshong, Steve, Collard, Harold R., Wolters, Paul J., Bradford, Williamson Z., Kossen, Karl, Seiwert, Scott D., du Bois, Roland M., Garcia, Christine Kim, Devine, Megan S., Gudmundsson, Gunnar, Isaksson, Helgi J., Kaminski, Naftali, Zhang, Yingze, Gibson, Kevin F., Lancaster, Lisa H., Cogan, Joy D., Mason, Wendi R., Maher, Toby M., Molyneaux, Philip L., Wells, Athol U., Moffatt, Miriam F., Selman, Moises, Pardo, Annie, Kim, Dong Soon, Crapo, James D., Make, Barry J., Regan, Elizabeth A., Walek, Dinesha S., Daniel, Jerry J., Kamatani, Yoichiro, Zelenika, Diana, Smith, Keith, McKean, David, Pedersen, Brent S., Talbert, Janet, Kidd, Ravin N., Markin, Cheryl R., Beckman, Kenneth B., Lathrop, Mark, Schwarz, Marvin I., Schwartz, David A.
Published 2013

Genome-wide imputation study identifies novel HLA locus for pulmonary fibrosis and potential role for auto-immunity in fibrotic idiopathic interstitial pneumonia

by Fingerlin, Tasha E., Zhang, Weiming, Yang, Ivana V., Ainsworth, Hannah C., Russell, Pamela H., Blumhagen, Rachel Z., Schwarz, Marvin I., Brown, Kevin K., Steele, Mark P., Loyd, James E., Cosgrove, Gregory P., Lynch, David A., Groshong, Steve, Collard, Harold R., Wolters, Paul J., Bradford, Williamson Z., Kossen, Karl, Seiwert, Scott D., du Bois, Roland M., Garcia, Christine Kim, Devine, Megan S., Gudmundsson, Gunnar, Isaksson, Helgi J., Kaminski, Naftali, Zhang, Yingze, Gibson, Kevin F., Lancaster, Lisa H., Maher, Toby M., Molyneaux, Philip L., Wells, Athol U., Moffatt, Miriam F., Selman, Moises, Pardo, Annie, Kim, Dong Soon, Crapo, James D., Make, Barry J., Regan, Elizabeth A., Walek, Dinesha S., Daniel, Jerry J., Kamatani, Yoichiro, Zelenika, Diana, Murphy, Elissa, Smith, Keith, McKean, David, Pedersen, Brent S., Talbert, Janet, Powers, Julia, Markin, Cheryl R., Beckman, Kenneth B., Lathrop, Mark, Freed, Brian, Langefeld, Carl D., Schwartz, David A.
Published 2016