An Integrative Approach to Infer Regulation Programs in a Transcription Regulatory Module Network

by Qi, Jianlong, Michoel, Tom, Butler, Gregory
Published 2012

Functional transcription factor target discovery via compendia of binding and expression profiles

by Banks, Christopher J., Joshi, Anagha, Michoel, Tom
Published 2016

Integrative Multi-omics Module Network Inference with Lemon-Tree

by Bonnet, Eric, Calzone, Laurence, Michoel, Tom
Published 2015

Structural and functional organization of RNA regulons in the post-transcriptional regulatory network of yeast

by Joshi, Anagha, Van de Peer, Yves, Michoel, Tom
Published 2011

kruX: matrix-based non-parametric eQTL discovery

by Qi, Jianlong, Asl, Hassan Foroughi, Björkegren, Johan, Michoel, Tom
Published 2014

Variable reproducibility in genome-scale public data: A case study using ENCODE ChIP sequencing resource

by Devailly, Guillaume, Mantsoki, Anna, Michoel, Tom, Joshi, Anagha
Published 2015

An Algorithm to Automatically Generate the Combinatorial Orbit Counting Equations

by Melckenbeeck, Ine, Audenaert, Pieter, Michoel, Tom, Colle, Didier, Pickavet, Mario
Published 2016

The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

by Demeyer, Sofie, Michoel, Tom, Fostier, Jan, Audenaert, Pieter, Pickavet, Mario, Demeester, Piet
Published 2013

The Index-Based Subgraph Matching Algorithm with General Symmetries (ISMAGS): Exploiting Symmetry for Faster Subgraph Enumeration

by Houbraken, Maarten, Demeyer, Sofie, Michoel, Tom, Audenaert, Pieter, Colle, Didier, Pickavet, Mario
Published 2014

Validating module network learning algorithms using simulated data

by Michoel, Tom, Maere, Steven, Bonnet, Eric, Joshi, Anagha, Saeys, Yvan, Van den Bulcke, Tim, Van Leemput, Koenraad, van Remortel, Piet, Kuiper, Martin, Marchal, Kathleen, Van de Peer, Yves
Published 2007

Microglial brain region-dependent diversity and selective regional sensitivities to ageing

by Grabert, Kathleen, Michoel, Tom, Karavolos, Michail H, Clohisey, Sara, Baillie, J Kenneth, Stevens, Mark P, Freeman, Tom C, Summers, Kim M, McColl, Barry W
Published 2016

Plasma Cholesterol–Induced Lesion Networks Activated before Regression of Early, Mature, and Advanced Atherosclerosis

by Björkegren, Johan L. M., Hägg, Sara, Talukdar, Husain A., Foroughi Asl, Hassan, Jain, Rajeev K., Cedergren, Cecilia, Shang, Ming-Mei, Rossignoli, Aránzazu, Takolander, Rabbe, Melander, Olle, Hamsten, Anders, Michoel, Tom, Skogsberg, Josefin
Published 2014

Technical Advance: Transcription factor, promoter, and enhancer utilization in human myeloid cells

by Joshi, Anagha, Pooley, Christopher, Freeman, Tom C., Lennartsson, Andreas, Babina, Magda, Schmidl, Christian, Geijtenbeek, Teunis, Michoel, Tom, Severin, Jessica, Itoh, Masayoshi, Lassmann, Timo, Kawaji, Hideya, Hayashizaki, Yoshihide, Carninci, Piero, Forrest, Alistair R. R., Rehli, Michael, Hume, David A.
Published 2015

Cross-Tissue Regulatory Gene Networks in Coronary Artery Disease

by Talukdar, Husain A., Asl, Hassan Foroughi, Jain, Rajeev K., Ermel, Raili, Ruusalepp, Arno, Franzén, Oscar, Kidd, Brian A., Readhead, Ben, Giannarelli, Chiara, Kovacic, Jason C., Ivert, Torbjörn, Dudley, Joel T., Civelek, Mete, Lusis, Aldons J., Schadt, Eric E., Skogsberg, Josefin, Michoel, Tom, Björkegren, Johan L.M.
Published 2016