Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes

by Bocs, Stéphanie, Danchin, Antoine, Médigue, Claudine
Published 2002

A new network representation of the metabolism to detect chemical transformation modules

by Sorokina, Maria, Medigue, Claudine, Vallenet, David
Published 2015

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

by Engelen, Stefan, Vallenet, David, Médigue, Claudine, Danchin, Antoine
Published 2012

Profiling the orphan enzymes

by Sorokina, Maria, Stam, Mark, Médigue, Claudine, Lespinet, Olivier, Vallenet, David
Published 2014

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

by Cruveiller, Stéphane, Le Saux, Jérôme, Vallenet, David, Lajus, Aurélie, Bocs, Stéphanie, Médigue, Claudine
Published 2005

The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes

by Smith, Adam Alexander Thil, Belda, Eugeni, Viari, Alain, Medigue, Claudine, Vallenet, David
Published 2012

Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria

by Plucain, Jessica, Suau, Antonia, Cruveiller, Stéphane, Médigue, Claudine, Schneider, Dominique, Le Gac, Mickaël
Published 2016

Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment

by Maddamsetti, Rohan, Hatcher, Philip J., Cruveiller, Stéphane, Médigue, Claudine, Barrick, Jeffrey E., Lenski, Richard E.
Published 2015

Complete Genome Sequence of Bacillus methylotrophicus Strain B25, a Potential Plant Growth-Promoting Rhizobacterium

by Gerbore, Jonathan, Brutel, Aline, Lemainque, Arnaud, Mairey, Barbara, Médigue, Claudine, Vallenet, David, Lefort, Francois, Grizard, Damien
Published 2016

Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

by Gomez-Valero, Laura, Rusniok, Christophe, Jarraud, Sophie, Vacherie, Benoit, Rouy, Zoé, Barbe, Valerie, Medigue, Claudine, Etienne, Jerome, Buchrieser, Carmen
Published 2011

Mutation Rate Inferred From Synonymous Substitutions in a Long-Term Evolution Experiment With Escherichia coli

by Wielgoss, Sébastien, Barrick, Jeffrey E., Tenaillon, Olivier, Cruveiller, Stéphane, Chane-Woon-Ming, Béatrice, Médigue, Claudine, Lenski, Richard E., Schneider, Dominique
Published 2011

MaGe: a microbial genome annotation system supported by synteny results

by Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, Lajus, Aurélie, Pascal, Géraldine, Scarpelli, Claude, Médigue, Claudine
Published 2006

Comparative Genomics between Two Xenorhabdus bovienii Strains Highlights Differential Evolutionary Scenarios within an Entomopathogenic Bacterial Species

by Bisch, Gaëlle, Ogier, Jean-Claude, Médigue, Claudine, Rouy, Zoé, Vincent, Stéphanie, Tailliez, Patrick, Givaudan, Alain, Gaudriault, Sophie
Published 2016

Genome Features of the Endophytic Actinobacterium Micromonospora lupini Strain Lupac 08: On the Process of Adaptation to an Endophytic Life Style?

by Trujillo, Martha E., Bacigalupe, Rodrigo, Pujic, Petar, Igarashi, Yasuhiro, Benito, Patricia, Riesco, Raúl, Médigue, Claudine, Normand, Philippe
Published 2014

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus

by Ogier, Jean-Claude, Calteau, Alexandra, Forst, Steve, Goodrich-Blair, Heidi, Roche, David, Rouy, Zoé, Suen, Garret, Zumbihl, Robert, Givaudan, Alain, Tailliez, Patrick, Médigue, Claudine, Gaudriault, Sophie
Published 2010

Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles

by Remenant, Benoît, de Cambiaire, Jean-Charles, Cellier, Gilles, Jacobs, Jonathan M., Mangenot, Sophie, Barbe, Valérie, Lajus, Aurélie, Vallenet, David, Medigue, Claudine, Fegan, Mark, Allen, Caitilyn, Prior, Philippe
Published 2011

Genome Sequence of the Sulfate-Reducing Bacterium Desulfotomaculum hydrothermale Lam5T

by Amin, Oulfat, Fardeau, Marie-Laure, Valette, Odile, Hirschler-Réa, Agnès, Barbe, Valérie, Médigue, Claudine, Vacherie, Benoit, Ollivier, Bernard, Bertin, Philippe N., Dolla, Alain
Published 2013

Attenuated Virulence and Genomic Reductive Evolution in the Entomopathogenic Bacterial Symbiont Species, Xenorhabdus poinarii

by Ogier, Jean-Claude, Pagès, Sylvie, Bisch, Gaëlle, Chiapello, Hélène, Médigue, Claudine, Rouy, Zoé, Teyssier, Corinne, Vincent, Stéphanie, Tailliez, Patrick, Givaudan, Alain, Gaudriault, Sophie
Published 2014

Comparative Genomics of Aeschynomene Symbionts: Insights into the Ecological Lifestyle of Nod-Independent Photosynthetic Bradyrhizobia

by Mornico, Damien, Miché, Lucie, Béna, Gilles, Nouwen, Nico, Verméglio, André, Vallenet, David, Smith, Alexander A.T., Giraud, Eric, Médigue, Claudine, Moulin, Lionel
Published 2011

Draft Genome Sequence of Carnobacterium divergens V41, a Bacteriocin-Producing Strain

by Remenant, Benoît, Borges, Frédéric, Cailliez-Grimal, Catherine, Revol-Junelles, Anne-Marie, Marché, Laurent, Lajus, Aurélie, Médigue, Claudine, Pilet, Marie-France, Prévost, Hervé, Zagorec, Monique
Published 2016