Quantitative Trait Locus Analysis: Multiple Cross and Heterogeneous Stock Mapping

by Hitzemann, Robert, Belknap, John K., McWeeney, Shannon K.
Published 2008

HitWalker2: visual analytics for precision medicine and beyond

by Bottomly, Daniel, McWeeney, Shannon K., Wilmot, Beth
Published 2016

plethy: management of whole body plethysmography data in R

by Bottomly, Daniel, Wilmot, Beth, McWeeney, Shannon K
Published 2015

Multi-omic network signatures of disease

by Gibbs, David L., Gralinski, Lisa, Baric, Ralph S., McWeeney, Shannon K.
Published 2014

Use of semantic workflows to enhance transparency and reproducibility in clinical omics

by Zheng, Christina L., Ratnakar, Varun, Gil, Yolanda, McWeeney, Shannon K.
Published 2015

Cosplicing network analysis of mammalian brain RNA-Seq data utilizing WGCNA and Mantel correlations

by Iancu, Ovidiu D., Colville, Alexandre, Oberbeck, Denesa, Darakjian, Priscila, McWeeney, Shannon K., Hitzemann, Robert
Published 2015

Protein Database and Quantitative Analysis Considerations when Integrating Genetics and Proteomics to Compare Mouse Strains

by Fei, Suzanne S., Wilmarth, Phillip A., Hitzemann, Robert J., McWeeney, Shannon K., Belknap, John K., David, Larry L.
Published 2011

Single-Nucleotide Polymorphism Masking

by Walter, Nicole A.R., McWeeney, Shannon K., Peters, Sandra T., Belknap, John K., Hitzemann, Robert, Buck, Kari J.
Published 2008

HitWalker: variant prioritization for personalized functional cancer genomics

by Bottomly, Daniel, Wilmot, Beth, Tyner, Jeffrey W., Eide, Christopher A., Loriaux, Marc M., Druker, Brian J., McWeeney, Shannon K.
Published 2013

Evaluating Gene Expression in C57BL/6J and DBA/2J Mouse Striatum Using RNA-Seq and Microarrays

by Bottomly, Daniel, Walter, Nicole A. R., Hunter, Jessica Ezzell, Darakjian, Priscila, Kawane, Sunita, Buck, Kari J., Searles, Robert P., Mooney, Michael, McWeeney, Shannon K., Hitzemann, Robert
Published 2011

Computational Detection of Alternative Exon Usage

by Laderas, Ted G., Walter, Nicole A. R., Mooney, Michael, Vartanian, Kristina, Darakjian, Priscila, Buck, Kari, Harrington, Christina A., Belknap, John, Hitzemann, Robert, McWeeney, Shannon K.
Published 2011

Protein co-expression network analysis (ProCoNA)

by Gibbs, David L, Baratt, Arie, Baric, Ralph S, Kawaoka, Yoshihiro, Smith, Richard D, Orwoll, Eric S, Katze, Michael G, McWeeney, Shannon K
Published 2013

Comparison of methods to identify aberrant expression patterns in individual patients: augmenting our toolkit for precision medicine

by Bottomly, Daniel, Ryabinin, Peter A, Tyner, Jeffrey W, Chang, Bill H, Loriaux, Marc M, Druker, Brian J, McWeeney, Shannon K, Wilmot, Beth
Published 2013

Splicing landscape of the eight collaborative cross founder strains

by Zheng, Christina L, Wilmot, Beth, Walter, Nicole AR, Oberbeck, Denesa, Kawane, Sunita, Searles, Robert P, McWeeney, Shannon K, Hitzemann, Robert
Published 2015

Does the Urinary Microbiome Play a Role in Urgency Urinary Incontinence and Its Severity?

by Karstens, Lisa, Asquith, Mark, Davin, Sean, Stauffer, Patrick, Fair, Damien, Gregory, W. Thomas, Rosenbaum, James T., McWeeney, Shannon K., Nardos, Rahel
Published 2016

Maternal high-fat diet and obesity compromise fetal hematopoiesis

by Kamimae-Lanning, Ashley N., Krasnow, Stephanie M., Goloviznina, Natalya A., Zhu, Xinxia, Roth-Carter, Quinn R., Levasseur, Peter R., Jeng, Sophia, McWeeney, Shannon K., Kurre, Peter, Marks, Daniel L.
Published 2014

Expression Quantitative Trait Loci for Extreme Host Response to Influenza A in Pre-Collaborative Cross Mice

by Bottomly, Daniel, Ferris, Martin T., Aicher, Lauri D., Rosenzweig, Elizabeth, Whitmore, Alan, Aylor, David L., Haagmans, Bart L., Gralinski, Lisa E., Bradel-Tretheway, Birgit G., Bryan, Janine T., Threadgill, David W., de Villena, Fernando Pardo-Manuel, Baric, Ralph S., Katze, Michael G., Heise, Mark, McWeeney, Shannon K.
Published 2012

Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross

by Ferris, Martin T., Aylor, David L., Bottomly, Daniel, Whitmore, Alan C., Aicher, Lauri D., Bell, Timothy A., Bradel-Tretheway, Birgit, Bryan, Janine T., Buus, Ryan J., Gralinski, Lisa E., Haagmans, Bart L., McMillan, Leonard, Miller, Darla R., Rosenzweig, Elizabeth, Valdar, William, Wang, Jeremy, Churchill, Gary A., Threadgill, David W., McWeeney, Shannon K., Katze, Michael G., Pardo-Manuel de Villena, Fernando, Baric, Ralph S., Heise, Mark T.
Published 2013