Comparative genomics of archaea: how much have we learned in six years, and what's next?

by Makarova, Kira S, Koonin, Eugene V
Published 2003

The CMG (CDC45/RecJ, MCM, GINS) complex is a conserved component of the DNA replication system in all archaea and eukaryotes

by Makarova, Kira S, Koonin, Eugene V, Kelman, Zvi
Published 2012

Conservation of the binding site for the arginine repressor in all bacterial lineages

by Makarova, Kira S, Mironov, Andrey A, Gelfand, Mikhail S
Published 2001

Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery

by Makarova, Kira S., Krupovic, Mart, Koonin, Eugene V.
Published 2014

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems

by Makarova, Kira S, Aravind, L, Wolf, Yuri I, Koonin, Eugene V
Published 2011

Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota"

by Koonin, Eugene V, Makarova, Kira S, Elkins, James G
Published 2007

Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins

by Makarova, Kira S, Ponomarev, Vladimir A, Koonin, Eugene V
Published 2001

Francisella RNA polymerase contains a heterodimer of non-identical α subunits

by Mukhamedyarov, Damir, Makarova, Kira S, Severinov, Konstantin, Kuznedelov, Konstantin
Published 2011

Phylogenomics of prokaryotic ribosomal proteins

by Yutin, Natalya, Makarova, Kira S, Wolf, Yuri I, Koonin, Eugene V
Published 2011

Comparative genomics of defense systems in archaea and bacteria

by Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.
Published 2013

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer

by Wolf, Yuri I, Makarova, Kira S, Yutin, Natalya, Koonin, Eugene V
Published 2012

Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes

by Makarova, Kira S, Anantharaman, Vivek, Aravind, L, Koonin, Eugene V
Published 2012

Classification and evolution of type II CRISPR-Cas systems

by Chylinski, Krzysztof, Makarova, Kira S., Charpentier, Emmanuelle, Koonin, Eugene V.
Published 2014

Evolution of plant δ1-pyrroline-5-carboxylate reductases from phylogenetic and structural perspectives

by Forlani, Giuseppe, Makarova, Kira S., Ruszkowski, Milosz, Bertazzini, Michele, Nocek, Boguslaw
Published 2015

Diversity and Evolution of Type IV pili Systems in Archaea

by Makarova, Kira S., Koonin, Eugene V., Albers, Sonja-Verena
Published 2016

ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs

by Kapitonov, Vladimir V., Makarova, Kira S., Koonin, Eugene V.
Published 2016

Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales

by Makarova, Kira S., Wolf, Yuri I., Koonin, Eugene V.
Published 2015

A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothet...

by Makarova, Kira S, Grishin, Nick V, Shabalina, Svetlana A, Wolf, Yuri I, Koonin, Eugene V
Published 2006

Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell

by Makarova, Kira S., Wolf, Yuri I., Mekhedov, Sergey L., Mirkin, Boris G., Koonin, Eugene V.
Published 2005

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

by Makarova, Kira S, Sorokin, Alexander V, Novichkov, Pavel S, Wolf, Yuri I, Koonin, Eugene V
Published 2007