Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues

by Bahar, Bojlul, Monahan, Frank J, Moloney, Aidan P, Schmidt, Olaf, MacHugh, David E, Sweeney, Torres
Published 2007

A genome-wide SNP-association study confirms a sequence variant (g.66493737C>T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Th...

by Hill, Emmeline W, McGivney, Beatrice A, Gu, Jingjing, Whiston, Ronan, MacHugh, David E
Published 2010

Genomic imprinting effects on complex traits in domesticated animal species

by O’Doherty, Alan M., MacHugh, David E., Spillane, Charles, Magee, David A.
Published 2015

The Identification of Circulating MiRNA in Bovine Serum and Their Potential as Novel Biomarkers of Early Mycobacterium avium subsp paratuberculosis Infection

by Farrell, Damien, Shaughnessy, Ronan G., Britton, Louise, MacHugh, David E., Markey, Bryan, Gordon, Stephen V.
Published 2015

Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus

by Rue-Albrecht, Kévin, Magee, David A., Killick, Kate E., Nalpas, Nicolas C., Gordon, Stephen V., MacHugh, David E.
Published 2014

Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease

by Meade, Kieran G, Gormley, Eamonn, Doyle, Mairéad B, Fitzsimons, Tara, O'Farrelly, Cliona, Costello, Eamon, Keane, Joseph, Zhao, Yingdong, MacHugh, David E
Published 2007

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis

by MacHugh, David E, Taraktsoglou, Maria, Killick, Kate E, Nalpas, Nicolas C, Browne, John A, DE Park, Stephen, Hokamp, Karsten, Gormley, Eamonn, Magee, David A
Published 2012

High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants

by Aulicino, Anna, Dinan, Adam M., Miranda-CasoLuengo, Aleksandra A., Browne, John A., Rue-Albrecht, Kévin, MacHugh, David E., Loftus, Brendan J.
Published 2015

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data

by Rue-Albrecht, Kévin, McGettigan, Paul A., Hernández, Belinda, Nalpas, Nicolas C., Magee, David A., Parnell, Andrew C., Gordon, Stephen V., MacHugh, David E.
Published 2016

Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes

by Killick, Kate E, Browne, John A, Park, Stephen DE, Magee, David A, Martin, Irene, Meade, Kieran G, Gordon, Stephen V, Gormley, Eamonn, O'Farrelly, Cliona, Hokamp, Karsten, MacHugh, David E
Published 2011

Global Gene Expression and Systems Biology Analysis of Bovine Monocyte-Derived Macrophages in Response to In Vitro Challenge with Mycobacterium bovis

by Magee, David A., Taraktsoglou, Maria, Killick, Kate E., Nalpas, Nicolas C., Browne, John A., Park, Stephen D. E., Conlon, Kevin M., Lynn, David J., Hokamp, Karsten, Gordon, Stephen V., Gormley, Eamonn, MacHugh, David E.
Published 2012

Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples

by Mullen, Michael P, Creevey, Christopher J, Berry, Donagh P, McCabe, Matt S, Magee, David A, Howard, Dawn J, Killeen, Aideen P, Park, Stephen D, McGettigan, Paul A, Lucy, Matt C, MacHugh, David E, Waters, Sinead M
Published 2012

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro

by Nalpas, Nicolas C, Park, Stephen DE, Magee, David A, Taraktsoglou, Maria, Browne, John A, Conlon, Kevin M, Rue-Albrecht, Kévin, Killick, Kate E, Hokamp, Karsten, Lohan, Amanda J, Loftus, Brendan J, Gormley, Eamonn, Gordon, Stephen V, MacHugh, David E
Published 2013

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli

by Nalpas, Nicolas C., Magee, David A., Conlon, Kevin M., Browne, John A., Healy, Claire, McLoughlin, Kirsten E., Rue-Albrecht, Kévin, McGettigan, Paul A., Killick, Kate E., Gormley, Eamonn, Gordon, Stephen V., MacHugh, David E.
Published 2015

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis

by McLoughlin, Kirsten E., Nalpas, Nicolas C., Rue-Albrecht, Kévin, Browne, John A., Magee, David A., Killick, Kate E., Park, Stephen D. E., Hokamp, Karsten, Meade, Kieran G., O’Farrelly, Cliona, Gormley, Eamonn, Gordon, Stephen V., MacHugh, David E.
Published 2014

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis

by Killick, Kate E., Magee, David A., Park, Stephen D. E., Taraktsoglou, Maria, Browne, John A., Conlon, Kevin M., Nalpas, Nicolas C., Gormley, Eamonn, Gordon, Stephen V., MacHugh, David E., Hokamp, Karsten
Published 2014

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq

by Casey, Maura E., Meade, Kieran G., Nalpas, Nicolas C., Taraktsoglou, Maria, Browne, John A., Killick, Kate E., Park, Stephen D. E., Gormley, Eamonn, Hokamp, Karsten, Magee, David A., MacHugh, David E.
Published 2015

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

by Park, Stephen D E, Magee, David A., McGettigan, Paul A., Teasdale, Matthew D., Edwards, Ceiridwen J., Lohan, Amanda J., Murphy, Alison, Braud, Martin, Donoghue, Mark T., Liu, Yuan, Chamberlain, Andrew T., Rue-Albrecht, Kévin, Schroeder, Steven, Spillane, Charles, Tai, Shuaishuai, Bradley, Daniel G., Sonstegard, Tad S., Loftus, Brendan J., MacHugh, David E.
Published 2015

Definition of the Cattle Killer Cell Ig–like Receptor Gene Family: Comparison with Aurochs and Human Counterparts

by Sanderson, Nicholas D., Norman, Paul J., Guethlein, Lisbeth A., Ellis, Shirley A., Williams, Christina, Breen, Matthew, Park, Steven D. E., Magee, David A., Babrzadeh, Farbod, Warry, Andrew, Watson, Mick, Bradley, Daniel G., MacHugh, David E., Parham, Peter, Hammond, John A.
Published 2014