Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions

by McElroy, Kerensa, Thomas, Torsten, Luciani, Fabio
Published 2014

GemSIM: general, error-model based simulator of next-generation sequencing data

by McElroy, Kerensa E, Luciani, Fabio, Thomas, Torsten
Published 2012

A Bioinformatics Pipeline for the Analyses of Viral Escape Dynamics and Host Immune Responses during an Infection

by Leung, Preston, Bull, Rowena, Lloyd, Andrew, Luciani, Fabio
Published 2014

Erratum to “A Bioinformatics Pipeline for the Analyses of Viral Escape Dynamics and Host Immune Responses during an Infection”

by Leung, Preston, Bull, Rowena, Lloyd, Andrew, Luciani, Fabio
Published 2014

Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification

by McElroy, Kerensa, Luciani, Fabio, Hui, Janice, Rice, Scott, Thomas, Torsten
Published 2011

Accurate single nucleotide variant detection in viral populations by combining probabilistic clustering with a statistical test of strand bias

by McElroy, Kerensa, Zagordi, Osvaldo, Bull, Rowena, Luciani, Fabio, Beerenwinkel, Niko
Published 2013

Current Understanding on the Role of Standard and Immunoproteasomes in Inflammatory/Immunological Pathways of Multiple Sclerosis

by Bellavista, Elena, Santoro, Aurelia, Galimberti, Daniela, Comi, Cristoforo, Luciani, Fabio, Mishto, Michele
Published 2014

Viral Quasispecies Assembly via Maximal Clique Enumeration

by Töpfer, Armin, Marschall, Tobias, Bull, Rowena A., Luciani, Fabio, Schönhuth, Alexander, Beerenwinkel, Niko
Published 2014

Evidence that hepatitis C virus genome partly controls infection outcome

by Hartfield, Matthew, Bull, Rowena, White, Peter A, Lloyd, Andrew, Luciani, Fabio, Alizon, Samuel
Published 2014

Inhibitors of the Hepatitis C Virus Polymerase; Mode of Action and Resistance

by Eltahla, Auda A., Luciani, Fabio, White, Peter A., Lloyd, Andrew R., Bull, Rowena A.
Published 2015

Transmission of Hepatitis C Virus among Prisoners, Australia, 2005–2012

by Bretaña, Neil Arvin, Boelen, Lies, Bull, Rowena, Teutsch, Suzy, White, Peter A., Lloyd, Andrew R., Luciani, Fabio
Published 2015

Accumulation of Deleterious Passenger Mutations Is Associated with the Progression of Hepatocellular Carcinoma

by Budzinska, Magdalena A., Tu, Thomas, d’Avigdor, William M. H., McCaughan, Geoffrey W., Luciani, Fabio, Shackel, Nicholas A.
Published 2016

Per-Event Probability of Hepatitis C Infection during Sharing of Injecting Equipment

by Boelen, Lies, Teutsch, Suzy, Wilson, David P., Dolan, Kate, Dore, Greg J., Lloyd, Andrew R., Luciani, Fabio
Published 2014

Sequential Bottlenecks Drive Viral Evolution in Early Acute Hepatitis C Virus Infection

by Bull, Rowena A., Luciani, Fabio, McElroy, Kerensa, Gaudieri, Silvana, Pham, Son T., Chopra, Abha, Cameron, Barbara, Maher, Lisa, Dore, Gregory J., White, Peter A., Lloyd, Andrew R.
Published 2011

Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring

by Youngson, Neil A, Lecomte, Virginie, Maloney, Christopher A, Leung, Preston, Liu, Jia, Hesson, Luke B, Luciani, Fabio, Krause, Lutz, Morris, Margaret J
Published 2016

A method for near full-length amplification and sequencing for six hepatitis C virus genotypes

by Bull, Rowena A., Eltahla, Auda A., Rodrigo, Chaturaka, Koekkoek, Sylvie M., Walker, Melanie, Pirozyan, Mehdi R., Betz-Stablein, Brigid, Toepfer, Armin, Laird, Melissa, Oh, Steve, Heiner, Cheryl, Maher, Lisa, Schinkel, Janke, Lloyd, Andrew R., Luciani, Fabio
Published 2016