Trimmomatic: a flexible trimmer for Illumina sequence data

by Bolger, Anthony M., Lohse, Marc, Usadel, Bjoern
Published 2014

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

by Lohse, Marc, Drechsel, Oliver, Kahlau, Sabine, Bock, Ralph
Published 2013

SLocX: Predicting Subcellular Localization of Arabidopsis Proteins Leveraging Gene Expression Data

by Ryngajllo, Malgorzata, Childs, Liam, Lohse, Marc, Giorgi, Federico M., Lude, Anja, Selbig, Joachim, Usadel, Björn
Published 2011

UV-B Irradiation Changes Specifically the Secondary Metabolite Profile in Broccoli Sprouts: Induced Signaling Overlaps with Defense Response to Biotic Stressors

by Mewis, Inga, Schreiner, Monika, Nguyen, Chau Nhi, Krumbein, Angelika, Ulrichs, Christian, Lohse, Marc, Zrenner, Rita
Published 2012

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

by Lohse, Marc, Bolger, Anthony M., Nagel, Axel, Fernie, Alisdair R., Lunn, John E., Stitt, Mark, Usadel, Björn
Published 2012

Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine

by Rotter, Ana, Camps, Céline, Lohse, Marc, Kappel, Christian, Pilati, Stefania, Hren, Matjaž, Stitt, Mark, Coutos-Thévenot, Pierre, Moser, Claudio, Usadel, Björn, Delrot, Serge, Gruden, Kristina
Published 2009

Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum)

by Lee, Yang Ping, Giorgi, Federico M, Lohse, Marc, Kvederaviciute, Kotryna, Klages, Sven, Usadel, Björn, Meskiene, Irute, Reinhardt, Richard, Hincha, Dirk K
Published 2013

Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits

by Freilich, Shiri, Lev, Shery, Gonda, Itay, Reuveni, Eli, Portnoy, Vitaly, Oren, Elad, Lohse, Marc, Galpaz, Navot, Bar, Einat, Tzuri, Galil, Wissotsky, Guy, Meir, Ayala, Burger, Joseph, Tadmor, Yaakov, Schaffer, Arthur, Fei, Zhangjun, Giovannoni, James, Lewinsohn, Efraim, Katzir, Nurit
Published 2015

Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa

by Hiremath, Pavana J, Farmer, Andrew, Cannon, Steven B, Woodward, Jimmy, Kudapa, Himabindu, Tuteja, Reetu, Kumar, Ashish, BhanuPrakash, Amindala, Mulaosmanovic, Benjamin, Gujaria, Neha, Krishnamurthy, Laxmanan, Gaur, Pooran M, KaviKishor, Polavarapu B, Shah, Trushar, Srinivasan, Ramamurthy, Lohse, Marc, Xiao, Yongli, Town, Christopher D, Cook, Douglas R, May, Gregory D, Varshney, Rajeev K
Published 2011