PLoS Computational Biology Conference Postcards from ISMB/ECCB 2011

by Madrigal, Pedro, Sela, Noa, Lin, Simon M.
Published 2011

Computational Evidence of NAGNAG Alternative Splicing in Human Large Intergenic Noncoding RNA

by Sun, Xiaoyong, Lin, Simon M., Yan, Xiaoyan
Published 2014

Model-based variance-stabilizing transformation for Illumina microarray data

by Lin, Simon M., Du, Pan, Huber, Wolfgang, Kibbe, Warren A.
Published 2008

nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays

by Du, Pan, Kibbe, Warren A, Lin, Simon M
Published 2007

Correction: A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

by Jiang, Hongmei, An, Lingling, Lin, Simon M., Feng, Gang, Qiu, Yuqing
Published 2013

A Statistical Framework for Accurate Taxonomic Assignment of Metagenomic Sequencing Reads

by Jiang, Hongmei, An, Lingling, Lin, Simon M., Feng, Gang, Qiu, Yuqing
Published 2012

RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells

by Penalva, Luiz OF, Burdick, Michael D, Lin, Simon M, Sutterluety, Hedwig, Keene, Jack D
Published 2004

Mining the Gene Wiki for functional genomic knowledge

by Good, Benjamin M, Howe, Douglas G, Lin, Simon M, Kibbe, Warren A, Su, Andrew I
Published 2011

A Framework for Annotating Human Genome in Disease Context

by Xu, Wei, Wang, Huisong, Cheng, Wenqing, Fu, Dong, Xia, Tian, Kibbe, Warren A., Lin, Simon M.
Published 2012

A Review on Genomics APIs

by Swaminathan, Rajeswari, Huang, Yungui, Moosavinasab, Soheil, Buckley, Ronald, Bartlett, Christopher W., Lin, Simon M.
Published 2015

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

by Zhu, Lihua J, Gazin, Claude, Lawson, Nathan D, Pagès, Hervé, Lin, Simon M, Lapointe, David S, Green, Michael R
Published 2010

Genome-Wide DNA Methylation Indicates Silencing of Tumor Suppressor Genes in Uterine Leiomyoma

by Navarro, Antonia, Yin, Ping, Monsivais, Diana, Lin, Simon M., Du, Pan, Wei, Jian-Jun, Bulun, Serdar E.
Published 2012

‘RE:fine drugs’: an interactive dashboard to access drug repurposing opportunities

by Moosavinasab, Soheil, Patterson, Jeremy, Strouse, Robert, Rastegar-Mojarad, Majid, Regan, Kelly, Payne, Philip R. O., Huang, Yungui, Lin, Simon M.
Published 2016

The disease and gene annotations (DGA): an annotation resource for human disease

by Peng, Kai, Xu, Wei, Zheng, Jianyong, Huang, Kegui, Wang, Huisong, Tong, Jiansong, Lin, Zhifeng, Liu, Jun, Cheng, Wenqing, Fu, Dong, Du, Pan, Kibbe, Warren A., Lin, Simon M., Xia, Tian
Published 2013

MD-CTS: An integrated terminology reference of clinical and translational medicine

by Ray, Will, Finamore, Joe, Rastegar-Mojarad, Majid, Kadolph, Chris, Ye, Zhan, Bohne, Jacquie, Xu, Yin, Burish, Dan, Sondelski, Joshua, Easker, Melissa, Finnegan, Brian, Bartkowiak, Barbara, Smith, Catherine Arnott, Tachinardi, Umberto, Mendonca, Eneida A., Weichelt, Bryan, Lin, Simon M.
Published 2016

SeqHBase: a big data toolset for family based sequencing data analysis

by He, Min, Person, Thomas N, Hebbring, Scott J, Heinzen, Ethan, Ye, Zhan, Schrodi, Steven J, McPherson, Elizabeth W, Lin, Simon M, Peissig, Peggy L, Brilliant, Murray H, O'Rawe, Jason, Robison, Reid J, Lyon, Gholson J, Wang, Kai
Published 2015

Technical Reproducibility of Genotyping SNP Arrays Used in Genome-Wide Association Studies

by Hong, Huixiao, Xu, Lei, Liu, Jie, Jones, Wendell D., Su, Zhenqiang, Ning, Baitang, Perkins, Roger, Ge, Weigong, Miclaus, Kelci, Zhang, Li, Park, Kyunghee, Green, Bridgett, Han, Tao, Fang, Hong, Lambert, Christophe G., Vega, Silvia C., Lin, Simon M., Jafari, Nadereh, Czika, Wendy, Wolfinger, Russell D., Goodsaid, Federico, Tong, Weida, Shi, Leming
Published 2012

Comparison of RNA-seq and microarray-based models for clinical endpoint prediction

by Zhang, Wenqian, Yu, Ying, Hertwig, Falk, Thierry-Mieg, Jean, Zhang, Wenwei, Thierry-Mieg, Danielle, Wang, Jian, Furlanello, Cesare, Devanarayan, Viswanath, Cheng, Jie, Deng, Youping, Hero, Barbara, Hong, Huixiao, Jia, Meiwen, Li, Li, Lin, Simon M, Nikolsky, Yuri, Oberthuer, André, Qing, Tao, Su, Zhenqiang, Volland, Ruth, Wang, Charles, Wang, May D., Ai, Junmei, Albanese, Davide, Asgharzadeh, Shahab, Avigad, Smadar, Bao, Wenjun, Bessarabova, Marina, Brilliant, Murray H., Brors, Benedikt, Chierici, Marco, Chu, Tzu-Ming, Zhang, Jibin, Grundy, Richard G., He, Min Max, Hebbring, Scott, Kaufman, Howard L., Lababidi, Samir, Lancashire, Lee J., Li, Yan, Lu, Xin X., Luo, Heng, Ma, Xiwen, Ning, Baitang, Noguera, Rosa, Peifer, Martin, Phan, John H., Roels, Frederik, Rosswog, Carolina, Shao, Susan, Shen, Jie, Theissen, Jessica, Tonini, Gian Paolo, Vandesompele, Jo, Wu, Po-Yen, Xiao, Wenzhong, Xu, Joshua, Xu, Weihong, Xuan, Jiekun, Yang, Yong, Ye, Zhan, Dong, Zirui, Zhang, Ke K., Yin, Ye, Zhao, Chen, Zheng, Yuanting, Wolfinger, Russell D., Shi, Tieliu, Malkas, Linda H., Berthold, Frank, Wang, Jun, Tong, Weida, Shi, Leming, Peng, Zhiyu, Fischer, Matthias
Published 2015