The evolution of genome-scale models of cancer metabolism

by Lewis, Nathan E., Abdel-Haleem, Alyaa M.
Published 2013

A proof for loop-law constraints in stoichiometric metabolic networks

by Noor, Elad, Lewis, Nathan E, Milo, Ron
Published 2012

Microbial laboratory evolution in the era of genome-scale science

by Conrad, Tom M, Lewis, Nathan E, Palsson, Bernhard Ø
Published 2011

Systems analysis of host–parasite interactions

by Swann, Justine, Jamshidi, Neema, Lewis, Nathan E., Winzeler, Elizabeth A.
Published 2015

Novel personalized pathway-based metabolomics models reveal key metabolic pathways for breast cancer diagnosis

by Huang, Sijia, Chong, Nicole, Lewis, Nathan E., Jia, Wei, Xie, Guoxiang, Garmire, Lana X.
Published 2016

Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways

by King, Zachary A., Dräger, Andreas, Ebrahim, Ali, Sonnenschein, Nikolaus, Lewis, Nathan E., Palsson, Bernhard O.
Published 2015

A novel low-parameter computational model to aid in-silico glycoengineering

by Spahn, Philipp N, Hansen, Anders H, Hansen, Henning G, Arnsdorf, Johnny, Kildegaard, Helene F, Lewis, Nathan E
Published 2015

Minimal metabolic pathway structure is consistent with associated biomolecular interactions

by Bordbar, Aarash, Nagarajan, Harish, Lewis, Nathan E, Latif, Haythem, Ebrahim, Ali, Federowicz, Stephen, Schellenberger, Jan, Palsson, Bernhard O
Published 2014

Multi-Tissue Computational Modeling Analyzes Pathophysiology of Type 2 Diabetes in MKR Mice

by Kumar, Amit, Harrelson, Thomas, Lewis, Nathan E., Gallagher, Emily J., LeRoith, Derek, Shiloach, Joseph, Betenbaugh, Michael J.
Published 2014

BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

by King, Zachary A., Lu, Justin, Dräger, Andreas, Miller, Philip, Federowicz, Stephen, Lerman, Joshua A., Ebrahim, Ali, Palsson, Bernhard O., Lewis, Nathan E.
Published 2016

Formulating multicellular models of metabolism in tissues: application to energy metabolism in the human brain

by Lewis, Nathan E., Schramm, Gunnar, Bordbar, Aarash, Schellenberger, Jan, Andersen, Michael Paul, Cheng, Jeffrey K., Patel, Nilam, Yee, Alex, Lewis, Randall A., Eils, Roland, König, Rainer, Palsson, Bernhard Ø.
Published 2010

Rapid neurogenesis through transcriptional activation in human stem cells

by Busskamp, Volker, Lewis, Nathan E, Guye, Patrick, Ng, Alex HM, Shipman, Seth L, Byrne, Susan M, Sanjana, Neville E, Murn, Jernej, Li, Yinqing, Li, Shangzhong, Stadler, Michael, Weiss, Ron, Church, George M
Published 2014

The Genomic Sequence of the Chinese Hamster Ovary (CHO) K1 cell line

by Xu, Xun, Nagarajan, Harish, Lewis, Nathan E., Pan, Shengkai, Cai, Zhiming, Liu, Xin, Chen, Wenbin, Xie, Min, Wang, Wenliang, Hammond, Stephanie, Andersen, Mikael R., Neff, Norma, Passarelli, Benedetto, Koh, Winston, Fan, H. Christina, Wang, Jianbin, Gui, Yaoting, Lee, Kelvin H., Betenbaugh, Michael J., Quake, Stephen R., Famili, Iman, Palsson, Bernhard O., Wang, Jun
Published 2011

Recon 2.2: from reconstruction to model of human metabolism

by Swainston, Neil, Smallbone, Kieran, Hefzi, Hooman, Dobson, Paul D., Brewer, Judy, Hanscho, Michael, Zielinski, Daniel C., Ang, Kok Siong, Gardiner, Natalie J., Gutierrez, Jahir M., Kyriakopoulos, Sarantos, Lakshmanan, Meiyappan, Li, Shangzhong, Liu, Joanne K., Martínez, Veronica S., Orellana, Camila A., Quek, Lake-Ee, Thomas, Alex, Zanghellini, Juergen, Borth, Nicole, Lee, Dong-Yup, Nielsen, Lars K., Kell, Douglas B., Lewis, Nathan E., Mendes, Pedro
Published 2016

JSBML 1.0: providing a smorgasbord of options to encode systems biology models

by Rodriguez, Nicolas, Thomas, Alex, Watanabe, Leandro, Vazirabad, Ibrahim Y., Kofia, Victor, Gómez, Harold F., Mittag, Florian, Matthes, Jakob, Rudolph, Jan, Wrzodek, Finja, Netz, Eugen, Diamantikos, Alexander, Eichner, Johannes, Keller, Roland, Wrzodek, Clemens, Fröhlich, Sebastian, Lewis, Nathan E., Myers, Chris J., Le Novère, Nicolas, Palsson, Bernhard Ø., Hucka, Michael, Dräger, Andreas
Published 2015

Do genome-scale models need exact solvers or clearer standards?

by Ebrahim, Ali, Almaas, Eivind, Bauer, Eugen, Bordbar, Aarash, Burgard, Anthony P, Chang, Roger L, Dräger, Andreas, Famili, Iman, Feist, Adam M, Fleming, Ronan MT, Fong, Stephen S, Hatzimanikatis, Vassily, Herrgård, Markus J, Holder, Allen, Hucka, Michael, Hyduke, Daniel, Jamshidi, Neema, Lee, Sang Yup, Le Novère, Nicolas, Lerman, Joshua A, Lewis, Nathan E, Ma, Ding, Mahadevan, Radhakrishnan, Maranas, Costas, Nagarajan, Harish, Navid, Ali, Nielsen, Jens, Nielsen, Lars K, Nogales, Juan, Noronha, Alberto, Pal, Csaba, Palsson, Bernhard O, Papin, Jason A, Patil, Kiran R, Price, Nathan D, Reed, Jennifer L, Saunders, Michael, Senger, Ryan S, Sonnenschein, Nikolaus, Sun, Yuekai, Thiele, Ines
Published 2015