SAMSA: a comprehensive metatranscriptome analysis pipeline

by Westreich, Samuel T., Korf, Ian, Mills, David A., Lemay, Danielle G.
Published 2016

Gene regulatory networks in lactation: identification of global principles using bioinformatics

by Lemay, Danielle G, Neville, Margaret C, Rudolph, Michael C, Pollard, Katherine S, German, J Bruce
Published 2007

Epigenetic Modifications Unlock the Milk Protein Gene Loci during Mouse Mammary Gland Development and Differentiation

by Rijnkels, Monique, Freeman-Zadrowski, Courtneay, Hernandez, Joseph, Potluri, Vani, Wang, Liguo, Li, Wei, Lemay, Danielle G.
Published 2013

Bifidobacteria grown on human milk oligosaccharides downregulate the expression of inflammation-related genes in Caco-2 cells

by Wickramasinghe, Saumya, Pacheco, Alline R., Lemay, Danielle G., Mills, David A.
Published 2015

RNA Sequencing of the Human Milk Fat Layer Transcriptome Reveals Distinct Gene Expression Profiles at Three Stages of Lactation

by Lemay, Danielle G., Ballard, Olivia A., Hughes, Maria A., Morrow, Ardythe L., Horseman, Nelson D., Nommsen-Rivers, Laurie A.
Published 2013

From Genes to Milk: Genomic Organization and Epigenetic Regulation of the Mammary Transcriptome

by Lemay, Danielle G., Pollard, Katherine S., Martin, William F., Freeman Zadrowski, Courtneay, Hernandez, Joseph, Korf, Ian, German, J. Bruce, Rijnkels, Monique
Published 2013

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes

by Lemay, Danielle G, Martin, William F, Hinrichs, Angie S, Rijnkels, Monique, German, J Bruce, Korf, Ian, Pollard, Katherine S
Published 2012

Erratum: Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

by Garrido, Daniel, Ruiz-Moyano, Santiago, Lemay, Danielle G., Sela, David A., German, J. Bruce, Mills, David A.
Published 2015

Comparative transcriptomics reveals key differences in the response to milk oligosaccharides of infant gut-associated bifidobacteria

by Garrido, Daniel, Ruiz-Moyano, Santiago, Lemay, Danielle G., Sela, David A., German, J. Bruce, Mills, David A.
Published 2015

The Human Colostrum Whey Proteome Is Altered in Gestational Diabetes Mellitus

by Grapov, Dmitry, Lemay, Danielle G., Weber, Darren, Phinney, Brett S., Azulay Chertok, Ilana R., Gho, Deborah S., German, J. Bruce, Smilowitz, Jennifer T.
Published 2014

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596

by Garrido, Daniel, Ruiz-Moyano, Santiago, Kirmiz, Nina, Davis, Jasmine C., Totten, Sarah M., Lemay, Danielle G., Ugalde, Juan A., German, J. Bruce, Lebrilla, Carlito B., Mills, David A.
Published 2016

Human Milk Oligosaccharides in Premature Infants: Absorption, Excretion and Influence on the Intestinal Microbiota

by Underwood, Mark A., Gaerlan, Stephanie, De Leoz, M. Lorna A., Dimapasoc, Lauren, Kalanetra, Karen M., Lemay, Danielle G., German, J. Bruce, Mills, David A., Lebrilla, Carlito B.
Published 2015

Sequencing the transcriptome of milk production: milk trumps mammary tissue

by Lemay, Danielle G, Hovey, Russell C, Hartono, Stella R, Hinde, Katie, Smilowitz, Jennifer T, Ventimiglia, Frank, Schmidt, Kimberli A, Lee, Joyce WS, Islas-Trejo, Alma, Silva, Pedro Ivo, Korf, Ian, Medrano, Juan F, Barry, Peter A, German, J Bruce
Published 2013

Maternal fucosyltransferase 2 status affects the gut bifidobacterial communities of breastfed infants

by Lewis, Zachery T, Totten, Sarah M, Smilowitz, Jennifer T, Popovic, Mina, Parker, Evan, Lemay, Danielle G, Van Tassell, Maxwell L, Miller, Michael J, Jin, Yong-Su, German, J Bruce, Lebrilla, Carlito B, Mills, David A
Published 2015

Lactation and Neonatal Nutrition: Defining and Refining the Critical Questions

by Neville, Margaret C., Anderson, Steven M., McManaman, James L., Badger, Thomas M., Bunik, Maya, Contractor, Nikhat, Crume, Tessa, Dabelea, Dana, Donovan, Sharon M., Forman, Nicole, Frank, Daniel N., Friedman, Jacob E., German, J. Bruce, Goldman, Armond, Hadsell, Darryl, Hambidge, Michael, Hinde, Katie, Horseman, Nelson D., Hovey, Russell C., Janoff, Edward, Krebs, Nancy F., Lebrilla, Carlito B., Lemay, Danielle G., MacLean, Paul S., Meier, Paula, Morrow, Ardythe L., Neu, Josef, Nommsen-Rivers, Laurie A., Raiten, Daniel J., Rijnkels, Monique, Seewaldt, Victoria, Shur, Barry D., VanHouten, Joshua, Williamson, Peter
Published 2012