Generalized Fragment Picking in Rosetta: Design, Protocols and Applications

by Gront, Dominik, Kulp, Daniel W., Vernon, Robert M., Strauss, Charlie E. M., Baker, David
Published 2011

Altering the O2-Dependent Reactivity of de novo Due Ferri Proteins

by Reig, Amanda J., Pires, Marcos M., Snyder, Rae Ana, Wu, Yibing, Jo, Hyunil, Kulp, Daniel W., Butch, Susan E., Calhoun, Jennifer R., Szyperski, Thomas, Solomon, Edward I., DeGrado, William F.
Published 2012

HIV Vaccine Design to Target Germline Precursors of Glycan-Dependent Broadly Neutralizing Antibodies

by Steichen, Jon M., Kulp, Daniel W., Tokatlian, Talar, Escolano, Amelia, Dosenovic, Pia, Stanfield, Robyn L., McCoy, Laura E., Ozorowski, Gabriel, Hu, Xiaozhen, Kalyuzhniy, Oleksandr, Briney, Bryan, Schiffner, Torben, Garces, Fernando, Freund, Natalia T., Gitlin, Alexander D., Menis, Sergey, Georgeson, Erik, Kubitz, Michael, Adachi, Yumiko, Jones, Meaghan, Mutafyan, Andrew A., Yun, Dong Soo, Mayer, Christian T., Ward, Andrew B., Burton, Dennis R., Wilson, Ian A., Irvine, Darrell J., Nussenzweig, Michel C., Schief, William R.
Published 2016

Tailored Immunogens Direct Affinity Maturation toward HIV Neutralizing Antibodies

by Briney, Bryan, Sok, Devin, Jardine, Joseph G., Kulp, Daniel W., Skog, Patrick, Menis, Sergey, Jacak, Ronald, Kalyuzhniy, Oleksandr, de Val, Natalia, Sesterhenn, Fabian, Le, Khoa M., Ramos, Alejandra, Jones, Meaghan, Saye-Francisco, Karen L., Blane, Tanya R., Spencer, Skye, Georgeson, Erik, Hu, Xiaozhen, Ozorowski, Gabriel, Adachi, Yumiko, Kubitz, Michael, Sarkar, Anita, Wilson, Ian A., Ward, Andrew B., Nemazee, David, Burton, Dennis R., Schief, William R.
Published 2016

Vaccine-Elicited Tier 2 HIV-1 Neutralizing Antibodies Bind to Quaternary Epitopes Involving Glycan-Deficient Patches Proximal to the CD4 Binding Site

by Crooks, Ema T., Tong, Tommy, Chakrabarti, Bimal, Narayan, Kristin, Georgiev, Ivelin S., Menis, Sergey, Huang, Xiaoxing, Kulp, Daniel, Osawa, Keiko, Muranaka, Janelle, Stewart-Jones, Guillaume, Destefano, Joanne, O’Dell, Sijy, LaBranche, Celia, Robinson, James E., Montefiori, David C., McKee, Krisha, Du, Sean X., Doria-Rose, Nicole, Kwong, Peter D., Mascola, John R., Zhu, Ping, Schief, William R., Wyatt, Richard T., Whalen, Robert G., Binley, James M.
Published 2015