Transposable element distribution, abundance and role in genome size variation in the genus Oryza

by Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, Kudrna, Dave, Wing, Rod A
Published 2007

Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences

by Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang, Wing, Rod A.
Published 2016

A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome

by Figueira, Thais Rezende e Silva, Okura, Vagner, Rodrigues da Silva, Felipe, Jose da Silva, Marcio, Kudrna, Dave, Ammiraju, Jetty SS, Talag, Jayson, Wing, Rod, Arruda, Paulo
Published 2012

DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements

by Wang, Jun, Yu, Yeisoo, Tao, Feng, Zhang, Jianwei, Copetti, Dario, Kudrna, Dave, Talag, Jayson, Lee, Seunghee, Wing, Rod A., Fan, Chuanzhu
Published 2016

Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics

by Wang, Wenming, Tanurdzic, Milos, Luo, Meizhong, Sisneros, Nicholas, Kim, Hye Ran, Weng, Jing-Ke, Kudrna, Dave, Mueller, Christopher, Arumuganathan, K, Carlson, John, Chapple, Clint, de Pamphilis, Claude, Mandoli, Dina, Tomkins, Jeff, Wing, Rod A, Banks, Jo Ann
Published 2005

Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey

by Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B, Lee, So-Jeong, Mueller, Christopher, Collura, Kristi, Zuccolo, Andrea, Buckingham, E Bryan, Grim, Suzanne M, Yanagiya, Kazuyo, Inoko, Hidetoshi, Shiina, Takashi, Flajnik, Martin F, Wing, Rod A, Ohta, Yuko
Published 2006

Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum

by Hass-Jacobus, Barbara L, Futrell-Griggs, Montona, Abernathy, Brian, Westerman, Rick, Goicoechea, Jose-Luis, Stein, Joshua, Klein, Patricia, Hurwitz, Bonnie, Zhou, Bin, Rakhshan, Fariborz, Sanyal, Abhijit, Gill, Navdeep, Lin, Jer-Young, Walling, Jason G, Luo, Mei Zhong, Ammiraju, Jetty Siva S, Kudrna, Dave, Kim, Hye Ran, Ware, Doreen, Wing, Rod A, Miguel, Phillip San, Jackson, Scott A
Published 2006

Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement

by De Vega, Jose J., Ayling, Sarah, Hegarty, Matthew, Kudrna, Dave, Goicoechea, Jose L., Ergon, Åshild, Rognli, Odd A., Jones, Charlotte, Swain, Martin, Geurts, Rene, Lang, Chunting, Mayer, Klaus F. X., Rössner, Stephan, Yates, Steven, Webb, Kathleen J., Donnison, Iain S., Oldroyd, Giles E. D., Wing, Rod A., Caccamo, Mario, Powell, Wayne, Abberton, Michael T., Skøt, Leif
Published 2015

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

by Zuccolo, Andrea, Bowers, John E, Estill, James C, Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José Luis, Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H, Pires, J Chris, Chanderbali, Andre, Soltis, Douglas E, Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S, Albert, Victor A, Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E, Tomkins, Jeffrey, dePamphilis, Claude W, Wing, Rod A, Leebens-Mack, Jim
Published 2011

Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data

by Zhang, Jianwei, Chen, Ling-Ling, Sun, Shuai, Kudrna, Dave, Copetti, Dario, Li, Weiming, Mu, Ting, Jiao, Wen-Biao, Xing, Feng, Lee, Seunghee, Talag, Jayson, Song, Jia-Ming, Du, Bogu, Xie, Weibo, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa
Published 2016

Sequencing of 15 622 gene‐bearing BACs clarifies the gene‐dense regions of the barley genome

by Muñoz‐Amatriaín, María, Lonardi, Stefano, Luo, MingCheng, Madishetty, Kavitha, Svensson, Jan T., Moscou, Matthew J., Wanamaker, Steve, Jiang, Tao, Kleinhofs, Andris, Muehlbauer, Gary J., Wise, Roger P., Stein, Nils, Ma, Yaqin, Rodriguez, Edmundo, Kudrna, Dave, Bhat, Prasanna R., Chao, Shiaoman, Condamine, Pascal, Heinen, Shane, Resnik, Josh, Wing, Rod, Witt, Heather N., Alpert, Matthew, Beccuti, Marco, Bozdag, Serdar, Cordero, Francesca, Mirebrahim, Hamid, Ounit, Rachid, Wu, Yonghui, You, Frank, Zheng, Jie, Simková, Hana, Dolezel, Jaroslav, Grimwood, Jane, Schmutz, Jeremy, Duma, Denisa, Altschmied, Lothar, Blake, Tom, Bregitzer, Phil, Cooper, Laurel, Dilbirligi, Muharrem, Falk, Anders, Feiz, Leila, Graner, Andreas, Gustafson, Perry, Hayes, Patrick M., Lemaux, Peggy, Mammadov, Jafar, Close, Timothy J.
Published 2015