Model composition through model reduction: a combined model of CD95 and NF-κB signaling pathways

by Kutumova, Elena, Zinovyev, Andrei, Sharipov, Ruslan, Kolpakov, Fedor
Published 2013

CYCLONET—an integrated database on cell cycle regulation and carcinogenesis

by Kolpakov, Fedor, Poroikov, Vladimir, Sharipov, Ruslan, Kondrakhin, Yury, Zakharov, Alexey, Lagunin, Alexey, Milanesi, Luciano, Kel, Alexander
Published 2007

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language

by Waltemath, Dagmar, Adams, Richard, Bergmann, Frank T, Hucka, Michael, Kolpakov, Fedor, Miller, Andrew K, Moraru, Ion I, Nickerson, David, Sahle, Sven, Snoep, Jacky L, Le Novère, Nicolas
Published 2011

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models

by Kulakovskiy, Ivan V., Vorontsov, Ilya E., Yevshin, Ivan S., Soboleva, Anastasiia V., Kasianov, Artem S., Ashoor, Haitham, Ba-alawi, Wail, Bajic, Vladimir B., Medvedeva, Yulia A., Kolpakov, Fedor A., Makeev, Vsevolod J.
Published 2016