Quantifying the Turnover of Transcriptional Subclasses of HIV-1-Infected Cells

by Althaus, Christian L., Joos, Beda, Perelson, Alan S., Günthard, Huldrych F.
Published 2014

Tailored enrichment strategy detects low abundant small noncoding RNAs in HIV-1 infected cells

by Althaus, Claudia F, Vongrad, Valentina, Niederöst, Barbara, Joos, Beda, Di Giallonardo, Francesca, Rieder, Philip, Pavlovic, Jovan, Trkola, Alexandra, Günthard, Huldrych F, Metzner, Karin J, Fischer, Marek
Published 2012

Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination

by Di Giallonardo, Francesca, Zagordi, Osvaldo, Duport, Yannick, Leemann, Christine, Joos, Beda, Künzli-Gontarczyk, Marzanna, Bruggmann, Rémy, Beerenwinkel, Niko, Günthard, Huldrych F., Metzner, Karin J.
Published 2013

24 Hours in the Life of HIV-1 in a T Cell Line

by Mohammadi, Pejman, Desfarges, Sébastien, Bartha, István, Joos, Beda, Zangger, Nadine, Muñoz, Miguel, Günthard, Huldrych F., Beerenwinkel, Niko, Telenti, Amalio, Ciuffi, Angela
Published 2013

Correction: 24 Hours in the Life of HIV-1 in a T Cell Line

by Mohammadi, Pejman, Desfarges, Sébastien, Bartha, István, Joos, Beda, Zangger, Nadine, Muñoz, Miguel, Günthard, Huldrych F., Beerenwinkel, Niko, Telenti, Amalio, Ciuffi, Angela
Published 2015

A Novel Acute Retroviral Syndrome Severity Score Predicts the Key Surrogate Markers for HIV-1 Disease Progression

by Braun, Dominique L., Kouyos, Roger, Oberle, Corinna, Grube, Christina, Joos, Beda, Fellay, Jacques, McLaren, Paul J., Kuster, Herbert, Günthard, Huldrych F.
Published 2014

Early Antiretroviral Therapy During Primary HIV-1 Infection Results in a Transient Reduction of the Viral Setpoint upon Treatment Interruption

by von Wyl, Viktor, Gianella, Sara, Fischer, Marek, Niederoest, Barbara, Kuster, Herbert, Battegay, Manuel, Bernasconi, Enos, Cavassini, Matthias, Rauch, Andri, Hirschel, Bernard, Vernazza, Pietro, Weber, Rainer, Joos, Beda, Günthard, Huldrych F.
Published 2011

Ambiguous Nucleotide Calls From Population-based Sequencing of HIV-1 are a Marker for Viral Diversity and the Age of Infection

by Kouyos, Roger D., von Wyl, Viktor, Yerly, Sabine, Böni, Jürg, Rieder, Philip, Joos, Beda, Taffé, Patrick, Shah, Cyril, Bürgisser, Philippe, Klimkait, Thomas, Weber, Rainer, Hirschel, Bernard, Cavassini, Matthias, Rauch, Andri, Battegay, Manuel, Vernazza, Pietro L., Bernasconi, Enos, Ledergerber, Bruno, Bonhoeffer, Sebastian, Günthard, Huldrych F.
Published 2011

Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs

by Oberle, Corinna S., Joos, Beda, Rusert, Peter, Campbell, Nottania K., Beauparlant, David, Kuster, Herbert, Weber, Jacqueline, Schenkel, Corinne D., Scherrer, Alexandra U., Magnus, Carsten, Kouyos, Roger, Rieder, Philip, Niederöst, Barbara, Braun, Dominique L., Pavlovic, Jovan, Böni, Jürg, Yerly, Sabine, Klimkait, Thomas, Aubert, Vincent, Trkola, Alexandra, Metzner, Karin J., Günthard, Huldrych F.
Published 2016

Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations

by Giallonardo, Francesca Di, Töpfer, Armin, Rey, Melanie, Prabhakaran, Sandhya, Duport, Yannick, Leemann, Christine, Schmutz, Stefan, Campbell, Nottania K., Joos, Beda, Lecca, Maria Rita, Patrignani, Andrea, Däumer, Martin, Beisel, Christian, Rusert, Peter, Trkola, Alexandra, Günthard, Huldrych F., Roth, Volker, Beerenwinkel, Niko, Metzner, Karin J.
Published 2014