5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells

by Stroud, Hume, Feng, Suhua, Morey Kinney, Shannon, Pradhan, Sriharsa, Jacobsen, Steven E
Published 2011

SHH1, a Homeodomain Protein Required for DNA Methylation, As Well As RDR2, RDM4, and Chromatin Remodeling Factors, Associate with RNA Polymerase IV

by Law, Julie A., Vashisht, Ajay A., Wohlschlegel, James A., Jacobsen, Steven E.
Published 2011

Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats

by Chan, Simon W.-L, Zhang, Xiaoyu, Bernatavichute, Yana V, Jacobsen, Steven E
Published 2006

Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis

by Zhang, Xiaoyu, Clarenz, Oliver, Cokus, Shawn, Bernatavichute, Yana V, Pellegrini, Matteo, Goodrich, Justin, Jacobsen, Steven E
Published 2007

Dynamic Regulation of ARGONAUTE4 within Multiple Nuclear Bodies in Arabidopsis thaliana

by Li, Carey F, Henderson, Ian R, Song, Liang, Fedoroff, Nina, Lagrange, Thierry, Jacobsen, Steven E
Published 2008

Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana

by Deleris, Angelique, Stroud, Hume, Bernatavichute, Yana, Johnson, Elizabeth, Klein, Gregor, Schubert, Daniel, Jacobsen, Steven E.
Published 2012

Interplay between Active Chromatin Marks and RNA-Directed DNA Methylation in Arabidopsis thaliana

by Greenberg, Maxim V. C., Deleris, Angelique, Hale, Christopher J., Liu, Ao, Feng, Suhua, Jacobsen, Steven E.
Published 2013

RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis

by Chan, Simon W.-L, Henderson, Ian R, Zhang, Xiaoyu, Shah, Govind, Chien, Jason S.-C, Jacobsen, Steven E
Published 2006

DNA Methyltransferases Are Required to Induce Heterochromatic Re-Replication in Arabidopsis

by Stroud, Hume, Hale, Christopher J., Feng, Suhua, Caro, Elena, Jacob, Yannick, Michaels, Scott D., Jacobsen, Steven E.
Published 2012

DDR complex facilitates global association of RNA Polymerase V to promoters and evolutionarily young transposons

by Zhong, Xuehua, Hale, Christopher J., Law, Julie A., Johnson, Lianna M., Feng, Suhua, Tu, Andy, Jacobsen, Steven E.
Published 2012

The roles of non-CG methylation in Arabidopsis

by Stroud, Hume, Do, Truman, Du, Jiamu, Zhong, Xuehua, Feng, Suhua, Johnson, Lianna, Patel, Dinshaw J., Jacobsen, Steven E.
Published 2013

Tissue-specific Distribution and Dynamic Changes of 5-Hydroxymethylcytosine in Mammalian Genomes*

by Kinney, Shannon Morey, Chin, Hang Gyeong, Vaisvila, Romualdas, Bitinaite, Jurate, Zheng, Yu, Estève, Pierre-Olivier, Feng, Suhua, Stroud, Hume, Jacobsen, Steven E., Pradhan, Sriharsa
Published 2011

Genetic and Functional Diversification of Small RNA Pathways in Plants

by Xie, Zhixin, Johansen, Lisa K, Gustafson, Adam M, Kasschau, Kristin D, Lellis, Andrew D, Zilberman, Daniel, Jacobsen, Steven E, Carrington, James C
Published 2004

Plants regenerated from tissue culture contain stable epigenome changes in rice

by Stroud, Hume, Ding, Bo, Simon, Stacey A, Feng, Suhua, Bellizzi, Maria, Pellegrini, Matteo, Wang, Guo-Liang, Meyers, Blake C, Jacobsen, Steven E
Published 2013

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse

by Morselli, Marco, Pastor, William A, Montanini, Barbara, Nee, Kevin, Ferrari, Roberto, Fu, Kai, Bonora, Giancarlo, Rubbi, Liudmilla, Clark, Amander T, Ottonello, Simone, Jacobsen, Steven E, Pellegrini, Matteo
Published 2015

Nucleosome Organization in Human Embryonic Stem Cells

by Yazdi, Puya G., Pedersen, Brian A., Taylor, Jared F., Khattab, Omar S., Chen, Yu-Han, Chen, Yumay, Jacobsen, Steven E., Wang, Ping H.
Published 2015

Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana

by Hale, Christopher J., Potok, Magdalena E., Lopez, Jennifer, Do, Truman, Liu, Ao, Gallego-Bartolome, Javier, Michaels, Scott D., Jacobsen, Steven E.
Published 2016

Increasing Nucleosome Occupancy Is Correlated with an Increasing Mutation Rate so Long as DNA Repair Machinery Is Intact

by Yazdi, Puya G., Pedersen, Brian A., Taylor, Jared F., Khattab, Omar S., Chen, Yu-Han, Chen, Yumay, Jacobsen, Steven E., Wang, Ping H.
Published 2015

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

by Tran, Robert K, Zilberman, Daniel, de Bustos, Cecilia, Ditt, Renata F, Henikoff, Jorja G, Lindroth, Anders M, Delrow, Jeffrey, Boyle, Tom, Kwong, Samson, Bryson, Terri D, Jacobsen, Steven E, Henikoff, Steven
Published 2005

SRA/SET domain-containing proteins link RNA polymerase V occupancy to DNA methylation

by Johnson, Lianna M., Du, Jiamu, Hale, Christopher J., Bischof, Sylvain, Feng, Suhua, Chodavarapu, Ramakrishna K., Zhong, Xuehua, Marson, Giuseppe, Pellegrini, Matteo, Segal, David J., Patel, Dinshaw J., Jacobsen, Steven E.
Published 2014